33 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdc48	AAA-ATPase. (809 aa)
	OsI_06254	Uncharacterized protein. (415 aa)
	OsI_06110	Uncharacterized protein. (315 aa)
	OsI_02297	Uncharacterized protein. (504 aa)
	OsI_00362	Uncharacterized protein. (281 aa)
	OsI_22453	Uncharacterized protein. (413 aa)
	OsI_25426	Uncharacterized protein. (233 aa)
	OsI_29318	Uncharacterized protein. (406 aa)
	OsI_31314	Uncharacterized protein. (392 aa)
	OsI_31316	SprT-like domain-containing protein. (670 aa)
	OsI_31793	Ubiquitin-like domain-containing protein. (192 aa)
	OsI_33783	CDC48_N domain-containing protein. (75 aa)
	OsI_34513	Uncharacterized protein. (575 aa)
	OsI_07141	UBA domain-containing protein. (242 aa)
	OsI_06092	Uncharacterized protein. (369 aa)
	OsI_09858	Uncharacterized protein. (534 aa)
	OsI_13255	Uncharacterized protein. (287 aa)
	OsI_10554	SprT-like domain-containing protein. (444 aa)
	OsI_20836	MPN domain-containing protein. (432 aa)
	OsI_19051	Ubiquitin-like domain-containing protein. (278 aa)
	OsI_26099	Ubiquitin-like domain-containing protein. (983 aa)
	OsI_26353	Uncharacterized protein. (292 aa)
	OsI_28673	Ubiquitin-like domain-containing protein. (609 aa)
	OsI_29256	Uncharacterized protein. (837 aa)
	OsI_31880	Uncharacterized protein. (330 aa)
	OsI_32816	Uncharacterized protein. (202 aa)
	OsI_33786	Uncharacterized protein. (755 aa)
	OsI_10714	VWFA domain-containing protein. (585 aa)
	OsI_16327	Uncharacterized protein. (392 aa)
	OsI_17067	Uncharacterized protein. (320 aa)
	OsI_17653	Uncharacterized protein. (566 aa)
	OsI_19049	Ubiquitin-like domain-containing protein. (93 aa)
	OsI_21697	Ubiquitin-like domain-containing protein. (304 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00362	OsI_06092	A2WKK6	B8AIW5	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00362	OsI_06110	A2WKK6	A2X1N0	Uncharacterized protein.	Uncharacterized protein.	0.869
OsI_00362	OsI_07141	A2WKK6	B8AHI3	Uncharacterized protein.	UBA domain-containing protein.	0.674
OsI_00362	OsI_09858	A2WKK6	B8AME3	Uncharacterized protein.	Uncharacterized protein.	0.699
OsI_00362	OsI_10554	A2WKK6	B8AQV1	Uncharacterized protein.	SprT-like domain-containing protein.	0.715
OsI_00362	OsI_10714	A2WKK6	A2XEF8	Uncharacterized protein.	VWFA domain-containing protein.	0.802
OsI_00362	OsI_13255	A2WKK6	B8AQD2	Uncharacterized protein.	Uncharacterized protein.	0.802
OsI_00362	OsI_17067	A2WKK6	A2XWN8	Uncharacterized protein.	Uncharacterized protein.	0.870
OsI_00362	OsI_19049	A2WKK6	A2Y216	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.715
OsI_00362	OsI_19051	A2WKK6	B8AZN6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.715
OsI_00362	OsI_20836	A2WKK6	B8AW79	Uncharacterized protein.	MPN domain-containing protein.	0.680
OsI_00362	OsI_21697	A2WKK6	A2Y9F5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.715
OsI_00362	OsI_22453	A2WKK6	A2YBG8	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00362	OsI_25426	A2WKK6	A2YJL9	Uncharacterized protein.	Uncharacterized protein.	0.715
OsI_00362	OsI_29256	A2WKK6	B8BAT4	Uncharacterized protein.	Uncharacterized protein.	0.871
OsI_00362	OsI_29318	A2WKK6	A2YVG1	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00362	OsI_31314	A2WKK6	A2Z142	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00362	OsI_31316	A2WKK6	A2Z144	Uncharacterized protein.	SprT-like domain-containing protein.	0.715
OsI_00362	OsI_31793	A2WKK6	A2Z2F7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.715
OsI_00362	OsI_32816	A2WKK6	B8BFU0	Uncharacterized protein.	Uncharacterized protein.	0.802

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