(71 nodes) Cellular response to topologically incorrect protein network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_02189	Uncharacterized protein. (274 aa)
	OsI_00362	Uncharacterized protein. (281 aa)
	OsI_39260	RING-type domain-containing protein. (304 aa)
	OsI_38794	Uncharacterized protein. (212 aa)
	OsI_37495	Uncharacterized protein. (203 aa)
	OsI_35411	Uncharacterized protein. (73 aa)
	OsI_35410	Uncharacterized protein. (370 aa)
	OsI_33786	Uncharacterized protein. (755 aa)
	OsI_31880	Uncharacterized protein. (330 aa)
	OsI_31865	Uncharacterized protein; Belongs to the heat shock protein 70 family. (668 aa)
	OsI_28153	Uncharacterized protein; Belongs to the heat shock protein 70 family. (529 aa)
	OsI_29256	Uncharacterized protein. (837 aa)
	OsI_27581	Uncharacterized protein. (273 aa)
	OsI_25939	Uncharacterized protein. (893 aa)
	OsI_27076	BZIP domain-containing protein. (866 aa)
	OsI_23562	Uncharacterized protein. (358 aa)
	OsI_22136	Uncharacterized protein; Belongs to the heat shock protein 70 family. (510 aa)
	OsI_20296	Uncharacterized protein. (336 aa)
	OsI_18749	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (242 aa)
	OsI_20053	Uncharacterized protein. (433 aa)
	OsI_18109	Uncharacterized protein. (278 aa)
	RGBB	Guanine nucleotide-binding protein subunit beta; Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (380 aa)
	OsI_12827	UBA domain-containing protein. (399 aa)
	OsI_14101	Uncharacterized protein. (434 aa)
	OsI_12445	Uncharacterized protein. (297 aa)
	OsI_10875	OTU domain-containing protein. (224 aa)
	OsI_08377	Uncharacterized protein. (1673 aa)
	OsI_08225	Uncharacterized protein. (63 aa)
	OsI_04375	Uncharacterized protein. (423 aa)
	OsI_04298	RING-type domain-containing protein. (561 aa)
	OsI_02404	J domain-containing protein. (380 aa)
	OsI_03326	Uncharacterized protein. (321 aa)
	OsI_38508	Uncharacterized protein. (68 aa)
	OsI_37074	Uncharacterized protein. (85 aa)
	OsI_37065	Uncharacterized protein. (434 aa)
	OsI_35416	Uncharacterized protein. (95 aa)
	OsI_35413	Uncharacterized protein. (352 aa)
	OsI_35412	Uncharacterized protein. (305 aa)
	OsI_35409	Uncharacterized protein. (318 aa)
	OsI_33783	CDC48_N domain-containing protein. (75 aa)
	OsI_27920	RING-type domain-containing protein. (455 aa)
	OsI_23881	PRKCSH domain-containing protein. (298 aa)
	OsI_22998	Uncharacterized protein. (97 aa)
	OsI_20227	Uncharacterized protein. (410 aa)
	OsI_20115	Uncharacterized protein. (478 aa)
	OsI_19954	BZIP domain-containing protein. (646 aa)
	OsI_19680	Uncharacterized protein. (430 aa)
	OsI_19657	J domain-containing protein. (367 aa)
	OsI_19407	LRAT domain-containing protein. (282 aa)
	OsI_17067	Uncharacterized protein. (320 aa)
	OsI_16747	RING-type domain-containing protein. (253 aa)
	OsI_14904	Uncharacterized protein; Belongs to the heat shock protein 70 family. (581 aa)
	OsI_14418	Uncharacterized protein. (448 aa)
	OsI_14361	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (249 aa)
	OsI_13494	Uncharacterized protein. (282 aa)
	OsI_13234	Uncharacterized protein. (426 aa)
	OsI_12994	RING-type domain-containing protein. (233 aa)
	OsI_10990	Uncharacterized protein. (415 aa)
	OsI_10985	Uncharacterized protein. (342 aa)
	OsI_10982	Uncharacterized protein. (438 aa)
	OsI_10981	Uncharacterized protein. (73 aa)
	OsI_10547	Uncharacterized protein; Belongs to the heat shock protein 70 family. (578 aa)
	cdc48	AAA-ATPase. (809 aa)
	OsI_09713	Uncharacterized protein; Belongs to the heat shock protein 70 family. (676 aa)
	OsI_09127	Uncharacterized protein; Belongs to the heat shock protein 70 family. (635 aa)
	OsI_06110	Uncharacterized protein. (315 aa)
	OsI_05978	OTU domain-containing protein. (208 aa)
	OsI_05577	Uncharacterized protein; Belongs to the heat shock protein 70 family. (665 aa)
	OsI_03866	RING-type domain-containing protein. (224 aa)
	OsI_02297	Uncharacterized protein. (504 aa)
	OsI_02187	Uncharacterized protein. (422 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00362	OsI_05978	A2WKK6	A2X1A0	Uncharacterized protein.	OTU domain-containing protein.	0.914
OsI_00362	OsI_06110	A2WKK6	A2X1N0	Uncharacterized protein.	Uncharacterized protein.	0.869
OsI_00362	OsI_14361	A2WKK6	A2XP56	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.823
OsI_00362	OsI_17067	A2WKK6	A2XWN8	Uncharacterized protein.	Uncharacterized protein.	0.870
OsI_00362	OsI_18749	A2WKK6	B8AYW3	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.823
OsI_00362	OsI_29256	A2WKK6	B8BAT4	Uncharacterized protein.	Uncharacterized protein.	0.871
OsI_00362	OsI_33783	A2WKK6	A2Z7U7	Uncharacterized protein.	CDC48_N domain-containing protein.	0.871
OsI_00362	OsI_33786	A2WKK6	B8BH45	Uncharacterized protein.	Uncharacterized protein.	0.871
OsI_00362	cdc48	A2WKK6	A2XCL6	Uncharacterized protein.	AAA-ATPase.	0.871
OsI_02187	OsI_02404	A2WQQ2	B8AA33	Uncharacterized protein.	J domain-containing protein.	0.702
OsI_02187	OsI_03326	A2WQQ2	B8A7P2	Uncharacterized protein.	Uncharacterized protein.	0.635
OsI_02187	OsI_04375	A2WQQ2	B8AC06	Uncharacterized protein.	Uncharacterized protein.	0.606
OsI_02187	OsI_09127	A2WQQ2	A2XA53	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.676
OsI_02187	OsI_09713	A2WQQ2	A2XBQ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.677
OsI_02187	OsI_10547	A2WQQ2	A2XE02	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.656
OsI_02187	OsI_10981	A2WQQ2	A2XF39	Uncharacterized protein.	Uncharacterized protein.	0.752
OsI_02187	OsI_10982	A2WQQ2	A2XF40	Uncharacterized protein.	Uncharacterized protein.	0.604
OsI_02187	OsI_10985	A2WQQ2	A2XF42	Uncharacterized protein.	Uncharacterized protein.	0.607
OsI_02187	OsI_10990	A2WQQ2	A2XF47	Uncharacterized protein.	Uncharacterized protein.	0.607
OsI_02187	OsI_12445	A2WQQ2	B8ALM9	Uncharacterized protein.	Uncharacterized protein.	0.612

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