37 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	OsI_38004	PPR_long domain-containing protein. (669 aa)
	OsI_38123	Epimerase domain-containing protein. (373 aa)
	OsI_37667	Tr-type G domain-containing protein. (495 aa)
	OsI_39040	Tr-type G domain-containing protein. (458 aa)
	OsI_25453	eIF-5a domain-containing protein. (92 aa)
	OsI_25360	Epimerase domain-containing protein. (392 aa)
	OsI_26733	Eukaryotic translation initiation factor 5A. (173 aa)
	OsI_21607	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily. (648 aa)
	OsI_17751	Uncharacterized protein. (593 aa)
	OsI_16007	Smg4_UPF3 domain-containing protein. (507 aa)
	OsI_15576	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (347 aa)
	OsI_10529	Smr domain-containing protein. (397 aa)
	OsI_11808	Ribosomal_S4 domain-containing protein. (148 aa)
	OsI_10067	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (292 aa)
	OsI_13610	Uncharacterized protein. (517 aa)
	OsI_05586	RPOL4c domain-containing protein. (142 aa)
	OsI_11445	Non-specific serine/threonine protein kinase. (424 aa)
	OsI_12206	Uncharacterized protein. (710 aa)
	OsI_17737	ABC transporter domain-containing protein. (207 aa)
	OsI_19893	Uncharacterized protein. (177 aa)
	OsI_20772	Uncharacterized protein. (536 aa)
	OsI_24652	Eukaryotic translation initiation factor 5A. (162 aa)
	OsI_25452	eIF-5a domain-containing protein. (80 aa)
	OsI_26961	S4 RNA-binding domain-containing protein. (118 aa)
	OsI_27353	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (457 aa)
	OsI_36648	S4 RNA-binding domain-containing protein. (76 aa)
	OsI_36650	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (195 aa)
	OsI_38381	Ribosomal_S4 domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	OsI_38384	S4 RNA-binding domain-containing protein. (173 aa)
	OsI_38459	Eukaryotic translation initiation factor 5A. (160 aa)
	OsI_03500	Uncharacterized protein. (360 aa)
	OsI_02352	JmjC domain-containing protein. (494 aa)
	OsI_02640	Uncharacterized protein. (361 aa)
	OsI_02634	Uncharacterized protein. (408 aa)
	OsI_05919	Translation factor GUF1 homolog, chloroplastic; Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily. (636 aa)
	ycf72-1	Uncharacterized protein ycf72. (137 aa)
	OsI_38247	Uncharacterized protein. (91 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_02634	OsI_10067	B8AB73	B8ANT6	Uncharacterized protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.914
OsI_02634	OsI_11808	B8AB73	B8AQJ1	Uncharacterized protein.	Ribosomal_S4 domain-containing protein.	0.914
OsI_02634	OsI_13610	B8AB73	B8AK76	Uncharacterized protein.	Uncharacterized protein.	0.442
OsI_02634	OsI_24652	B8AB73	A2YHI1	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.442
OsI_02634	OsI_25452	B8AB73	A2YJP8	Uncharacterized protein.	eIF-5a domain-containing protein.	0.442
OsI_02634	OsI_25453	B8AB73	B8B8J3	Uncharacterized protein.	eIF-5a domain-containing protein.	0.442
OsI_02634	OsI_26733	B8AB73	B8B833	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.442
OsI_02634	OsI_26961	B8AB73	A2YNY2	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.914
OsI_02634	OsI_36648	B8AB73	A2ZFU0	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.914
OsI_02634	OsI_36650	B8AB73	A2ZFU3	Uncharacterized protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.914
OsI_02634	OsI_38381	B8AB73	A2ZKN7	Uncharacterized protein.	Ribosomal_S4 domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.914
OsI_02634	OsI_38384	B8AB73	A2ZKN9	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.914
OsI_02634	OsI_38459	B8AB73	A6N028	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.442
OsI_02634	ycf72-1	B8AB73	P0C309	Uncharacterized protein.	Uncharacterized protein ycf72.	0.914
OsI_02640	OsI_10067	B8AB36	B8ANT6	Uncharacterized protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.914
OsI_02640	OsI_11808	B8AB36	B8AQJ1	Uncharacterized protein.	Ribosomal_S4 domain-containing protein.	0.914
OsI_02640	OsI_13610	B8AB36	B8AK76	Uncharacterized protein.	Uncharacterized protein.	0.442
OsI_02640	OsI_24652	B8AB36	A2YHI1	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.442
OsI_02640	OsI_25452	B8AB36	A2YJP8	Uncharacterized protein.	eIF-5a domain-containing protein.	0.442
OsI_02640	OsI_25453	B8AB36	B8B8J3	Uncharacterized protein.	eIF-5a domain-containing protein.	0.442

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