STRINGSTRING
OsI_31111 OsI_31111 OsI_30080 OsI_30080 OsI_30044 OsI_30044 OsI_29023 OsI_29023 OsI_27631 OsI_27631 OsI_28115 OsI_28115 OsI_28099 OsI_28099 OsI_28098 OsI_28098 OsI_28975 OsI_28975 OsI_25344 OsI_25344 OsI_27267 OsI_27267 OsI_25713 OsI_25713 OsI_24300 OsI_24300 OsI_23961 OsI_23961 LIP1P-2 LIP1P-2 OsI_19006 OsI_19006 OsI_20349 OsI_20349 OsI_20143 OsI_20143 NBP35-2 NBP35-2 OsI_15965 OsI_15965 OsI_15195 OsI_15195 OsI_17983 OsI_17983 OsI_17963 OsI_17963 OsI_15083 OsI_15083 OsI_13396 OsI_13396 OsI_13270 OsI_13270 OsI_13269 OsI_13269 OsI_10424 OsI_10424 OsI_10377 OsI_10377 OsI_12698 OsI_12698 OsI_11301 OsI_11301 OsI_09921 OsI_09921 OsI_12458 OsI_12458 OsI_13702 OsI_13702 OsI_12075 OsI_12075 OsI_09059 OsI_09059 OsI_07523 OsI_07523 OsI_07377 OsI_07377 OsI_08910 OsI_08910 OsI_07297 OsI_07297 OsI_07296 OsI_07296 OsI_07289 OsI_07289 OsI_05669 OsI_05669 OsI_06840 OsI_06840 OsI_06764 OsI_06764 OsI_06637 OsI_06637 OsI_07973 OsI_07973 OsI_07795 OsI_07795 OsI_03021 OsI_03021 OsI_02962 OsI_02962 OsI_02661 OsI_02661 OsI_00912 OsI_00912 LIP1P-1 LIP1P-1 OsI_05406 OsI_05406 OsI_03581 OsI_03581 OsI_01913 OsI_01913 OsI_01871 OsI_01871 OsI_03145 OsI_03145 OsI_39078 OsI_39078 OsI_38781 OsI_38781 OsI_27482 OsI_27482 OsI_38508 OsI_38508 OsI_38457 OsI_38457 OsI_37821 OsI_37821 OsI_37818 OsI_37818 OsI_37815 OsI_37815 OsI_36445 OsI_36445 OsI_36424 OsI_36424 OsI_01069 OsI_01069 OsI_01075 OsI_01075 OsI_01875 OsI_01875 OsI_03020 OsI_03020 OsI_03540 OsI_03540 OsI_03544 OsI_03544 OsI_05752 OsI_05752 OsI_06078 OsI_06078 OsI_06397 OsI_06397 OsI_06904 OsI_06904 OsI_07371 OsI_07371 NBP35 NBP35 OsI_11172 OsI_11172 OsI_13021 OsI_13021 OsI_13397 OsI_13397 OsI_13510 OsI_13510 OsI_13711 OsI_13711 OsI_14070 OsI_14070 LIP1 LIP1 H0219H12.8 H0219H12.8 OsI_16373 OsI_16373 OsI_17160 OsI_17160 OsI_17244 OsI_17244 H0403D02.15 H0403D02.15 OsI_18432 OsI_18432 OsI_18522 OsI_18522 BLE3 BLE3 OsI_19537 OsI_19537 OsI_20146 OsI_20146 OsI_20527 OsI_20527 OsI_20756 OsI_20756 OsI_21140 OsI_21140 OsI_22263 OsI_22263 OsI_24684 OsI_24684 OsI_25828 OsI_25828 OsI_26153 OsI_26153 OsI_27090 OsI_27090 OsI_27431 OsI_27431 ndhI ndhI psaC psaC psaB psaB psaA psaA ndhK ndhK OsI_38036 OsI_38036 OsI_37819 OsI_37819 OsI_37662 OsI_37662 OsI_39071 OsI_39071 OsI_38774 OsI_38774 OsI_38511 OsI_38511 OsI_38510 OsI_38510 NTH1 NTH1 OsI_35398 OsI_35398 OsI_35393 OsI_35393 OsI_35353 OsI_35353 OsI_33716 OsI_33716 OsI_30537 OsI_30537
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_311114Fe-4S ferredoxin-type domain-containing protein. (311 aa)
OsI_30080Uncharacterized protein. (377 aa)
OsI_30044CASP-like protein UU1; Belongs to the Casparian strip membrane proteins (CASP) family. (167 aa)
OsI_29023Fe-S_biosyn domain-containing protein. (166 aa)
OsI_27631Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (406 aa)
OsI_28115Uncharacterized protein. (104 aa)
OsI_28099Aconitase domain-containing protein. (396 aa)
OsI_28098Uncharacterized protein. (621 aa)
OsI_28975Uncharacterized protein. (157 aa)
OsI_25344Uncharacterized protein. (316 aa)
OsI_27267DNA polymerase. (1797 aa)
OsI_25713DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (463 aa)
OsI_24300Uncharacterized protein. (219 aa)
OsI_23961CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (189 aa)
LIP1P-2Lipoyl synthase 2, chloroplastic; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (384 aa)
OsI_19006Elp3 domain-containing protein. (495 aa)
OsI_20349CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (71 aa)
OsI_20143ENDO3c domain-containing protein. (1873 aa)
NBP35-2Cytosolic Fe-S cluster assembly factor NBP35; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. Functions as Fe-S scaffold, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Essential for embryo development. (346 aa)
OsI_15965Uncharacterized protein. (629 aa)
OsI_15195CASP-like protein 2A1; Belongs to the Casparian strip membrane proteins (CASP) family. (209 aa)
OsI_17983Casparian strip membrane protein 1; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). (224 aa)
OsI_17963Anamorsin homolog 2; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the cytosolic Fe-S scaffold complex. Electrons are transferred from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Together with the diflavin oxidoreductase, also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase ( [...] (264 aa)
OsI_15083Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (648 aa)
OsI_13396Uncharacterized protein. (459 aa)
OsI_132704Fe-4S His(Cys)3-ligated-type domain-containing protein. (328 aa)
OsI_13269Uncharacterized protein. (627 aa)
OsI_10424Radical_SAM domain-containing protein. (388 aa)
OsI_10377CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (195 aa)
OsI_12698Uncharacterized protein. (288 aa)
OsI_11301Uncharacterized protein. (288 aa)
OsI_09921Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (986 aa)
OsI_12458UvrD_C_2 domain-containing protein. (565 aa)
OsI_13702Uncharacterized protein. (261 aa)
OsI_12075Uncharacterized protein. (396 aa)
OsI_09059Uncharacterized protein. (640 aa)
OsI_07523Uncharacterized protein. (400 aa)
OsI_07377DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2081 aa)
OsI_08910CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (223 aa)
OsI_07297Perm-CXXC domain-containing protein. (1165 aa)
OsI_07296Uncharacterized protein. (269 aa)
OsI_07289RRM_DME domain-containing protein. (1111 aa)
OsI_05669Aconitase domain-containing protein. (514 aa)
OsI_06840CbiX domain-containing protein. (125 aa)
OsI_06764Uncharacterized protein. (669 aa)
OsI_06637Elp3 domain-containing protein. (391 aa)
OsI_07973Uncharacterized protein. (744 aa)
OsI_07795Casparian strip membrane protein 5; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). (201 aa)
OsI_03021Radical_SAM domain-containing protein. (405 aa)
OsI_02962Uncharacterized protein. (268 aa)
OsI_02661Helicase ATP-binding domain-containing protein. (984 aa)
OsI_00912ENDO3c domain-containing protein. (1952 aa)
LIP1P-1Lipoyl synthase 1, chloroplastic; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (370 aa)
OsI_05406Elp3 domain-containing protein. (395 aa)
OsI_03581CASP-like protein 3A1; Belongs to the Casparian strip membrane proteins (CASP) family. (204 aa)
OsI_01913CASP-like protein 1E1; Belongs to the Casparian strip membrane proteins (CASP) family. (215 aa)
OsI_01871Uncharacterized protein. (596 aa)
OsI_03145CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (279 aa)
OsI_39078CASP-like protein 1B1; Belongs to the Casparian strip membrane proteins (CASP) family. (195 aa)
OsI_38781CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (182 aa)
OsI_27482Casparian strip membrane protein 2; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). (235 aa)
OsI_38508Uncharacterized protein. (68 aa)
OsI_38457Elp3 domain-containing protein. (399 aa)
OsI_37821Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (468 aa)
OsI_37818Uncharacterized protein. (405 aa)
OsI_37815Uncharacterized protein. (384 aa)
OsI_36445CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (171 aa)
OsI_36424Uncharacterized protein. (474 aa)
OsI_01069CASP-like protein 1C1-1; Belongs to the Casparian strip membrane proteins (CASP) family. (162 aa)
OsI_01075CASP-like protein 1C1-2; Belongs to the Casparian strip membrane proteins (CASP) family. (162 aa)
OsI_01875Uncharacterized protein. (100 aa)
OsI_03020CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (400 aa)
OsI_03540Uncharacterized protein. (500 aa)
OsI_03544Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (199 aa)
OsI_05752CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (340 aa)
OsI_06078CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (195 aa)
OsI_06397CASP-like protein 2D1; Belongs to the Casparian strip membrane proteins (CASP) family. (201 aa)
OsI_06904Uncharacterized protein. (65 aa)
OsI_07371DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (152 aa)
NBP35Cytosolic Fe-S cluster assembly factor NBP35; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. Functions as Fe-S scaffold, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Essential for embryo development. (355 aa)
OsI_11172CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (206 aa)
OsI_13021Uncharacterized protein. (588 aa)
OsI_13397Uncharacterized protein. (482 aa)
OsI_13510Fe_hyd_SSU domain-containing protein; Belongs to the NARF family. (476 aa)
OsI_13711Flavodoxin-like domain-containing protein. (653 aa)
OsI_14070CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (156 aa)
LIP1Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (382 aa)
H0219H12.8Casparian strip membrane protein 6; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). (186 aa)
OsI_16373Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (573 aa)
OsI_17160Uncharacterized protein. (1269 aa)
OsI_17244FAD-binding FR-type domain-containing protein. (720 aa)
H0403D02.15Anamorsin homolog 1; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the cytosolic Fe-S scaffold complex. Electrons are transferred from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Together with the diflavin oxidoreductase, also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase ( [...] (265 aa)
OsI_18432Helicase ATP-binding domain-containing protein. (734 aa)
OsI_18522Nfu_N domain-containing protein. (272 aa)
BLE3CASP-like protein BLE3; Involved in cell elongation in rice through dual regulation by brassinolide and auxin. (162 aa)
OsI_19537CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (204 aa)
OsI_20146ENDO3c domain-containing protein. (1802 aa)
OsI_20527Uncharacterized protein. (641 aa)
OsI_20756Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (204 aa)
OsI_21140Uncharacterized protein. (276 aa)
OsI_22263Casparian strip membrane protein 3; Regulates membrane-cell wall junctions and localised cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). (184 aa)
OsI_24684Uncharacterized protein. (135 aa)
OsI_25828CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (209 aa)
OsI_26153Thioredoxin domain-containing protein. (432 aa)
OsI_27090NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (529 aa)
OsI_27431CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (200 aa)
ndhINAD(P)H-quinone oxidoreductase subunit I, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Belongs to the complex I 23 kDa subunit family. (180 aa)
psaCPhotosystem I iron-sulfur center; Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, [...] (81 aa)
psaBPhotosystem I P700 chlorophyll a apoprotein A2; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. (734 aa)
psaAPhotosystem I P700 chlorophyll a apoprotein A1; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. (750 aa)
ndhKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Belongs to the complex I 20 kDa subunit family. (225 aa)
OsI_38036SufE domain-containing protein. (676 aa)
OsI_37819Uncharacterized protein. (247 aa)
OsI_37662Uncharacterized protein. (221 aa)
OsI_39071CASP-like protein 1B2; Belongs to the Casparian strip membrane proteins (CASP) family. (195 aa)
OsI_38774CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (120 aa)
OsI_38511CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (143 aa)
OsI_38510CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (132 aa)
NTH1Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (373 aa)
OsI_35398DNA polymerase. (1087 aa)
OsI_35393Uncharacterized protein. (194 aa)
OsI_35353Uncharacterized protein. (228 aa)
OsI_33716Uncharacterized protein. (555 aa)
OsI_30537Ferredoxin-thioredoxin reductase, catalytic chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin. (146 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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