36 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_24054	Uncharacterized protein. (1254 aa)
	OsI_37998	Uncharacterized protein. (989 aa)
	OsI_37926	Uncharacterized protein. (180 aa)
	OsI_37630	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (536 aa)
	OsI_34858	PAP-associated domain-containing protein. (801 aa)
	OsI_37050	PAP_central domain-containing protein. (248 aa)
	OsI_32948	Uncharacterized protein. (586 aa)
	OsI_32469	NTP_transf_2 domain-containing protein. (553 aa)
	OsI_31882	Uncharacterized protein. (225 aa)
	OsI_29472	HD domain-containing protein. (718 aa)
	OsI_30272	Uncharacterized protein. (580 aa)
	OsI_27407	Uncharacterized protein. (455 aa)
	OsI_27344	Uncharacterized protein. (1001 aa)
	OsI_22314	Uncharacterized protein. (1863 aa)
	OsI_22746	Uncharacterized protein. (748 aa)
	OsI_17161	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (556 aa)
	OsI_10487	NTP_transf_2 domain-containing protein. (1316 aa)
	OsI_11504	HD domain-containing protein. (761 aa)
	OsI_11468	Uncharacterized protein. (860 aa)
	OsI_11288	Uncharacterized protein. (519 aa)
	OsI_09859	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (558 aa)
	OsI_08580	RelA_SpoT domain-containing protein. (847 aa)
	OsI_06415	PAP_central domain-containing protein. (608 aa)
	OsI_04418	Uncharacterized protein. (381 aa)
	OsI_04417	Uncharacterized protein. (557 aa)
	OsI_03224	Uncharacterized protein. (571 aa)
	OsI_31540	HD domain-containing protein. (533 aa)
	OsI_26844	Uncharacterized protein. (296 aa)
	OsI_23369	Uncharacterized protein. (760 aa)
	OsI_18568	Uncharacterized protein. (578 aa)
	OsI_18566	Uncharacterized protein. (559 aa)
	OsI_18565	Uncharacterized protein. (922 aa)
	OsI_15711	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (542 aa)
	OsI_06439	Uncharacterized protein. (683 aa)
	OsI_05643	Uncharacterized protein. (597 aa)
	OsI_02979	NTP_transf_2 domain-containing protein. (127 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_02979	OsI_22746	A2WSY9	B8B154	NTP_transf_2 domain-containing protein.	Uncharacterized protein.	0.956
OsI_03224	OsI_24054	B8A791	B8B166	Uncharacterized protein.	Uncharacterized protein.	0.408
OsI_05643	OsI_10487	A2X0A3	B8AQV6	Uncharacterized protein.	NTP_transf_2 domain-containing protein.	0.454
OsI_05643	OsI_24054	A2X0A3	B8B166	Uncharacterized protein.	Uncharacterized protein.	0.404
OsI_06439	OsI_11288	A2X2M3	B8AMY0	Uncharacterized protein.	Uncharacterized protein.	0.483
OsI_06439	OsI_22746	A2X2M3	B8B154	Uncharacterized protein.	Uncharacterized protein.	0.958
OsI_06439	OsI_27407	A2X2M3	B8B6C5	Uncharacterized protein.	Uncharacterized protein.	0.474
OsI_09859	OsI_22746	B8AME4	B8B154	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Uncharacterized protein.	0.471
OsI_10487	OsI_05643	B8AQV6	A2X0A3	NTP_transf_2 domain-containing protein.	Uncharacterized protein.	0.454
OsI_11288	OsI_06439	B8AMY0	A2X2M3	Uncharacterized protein.	Uncharacterized protein.	0.483
OsI_11288	OsI_17161	B8AMY0	B8ATD7	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.499
OsI_11288	OsI_22746	B8AMY0	B8B154	Uncharacterized protein.	Uncharacterized protein.	0.844
OsI_11288	OsI_23369	B8AMY0	A2YE24	Uncharacterized protein.	Uncharacterized protein.	0.483
OsI_11504	OsI_18565	B8APD8	A2Y0P1	HD domain-containing protein.	Uncharacterized protein.	0.872
OsI_11504	OsI_18566	B8APD8	A2Y0P2	HD domain-containing protein.	Uncharacterized protein.	0.871
OsI_11504	OsI_18568	B8APD8	A2Y0P4	HD domain-containing protein.	Uncharacterized protein.	0.869
OsI_11504	OsI_26844	B8APD8	A2YNM5	HD domain-containing protein.	Uncharacterized protein.	0.862
OsI_11504	OsI_29472	B8APD8	B8BBA8	HD domain-containing protein.	HD domain-containing protein.	0.874
OsI_11504	OsI_31540	B8APD8	A2Z1Q6	HD domain-containing protein.	HD domain-containing protein.	0.858
OsI_17161	OsI_11288	B8ATD7	B8AMY0	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.499

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