STRINGSTRING
OsI_00099 OsI_00099 OsI_36896 OsI_36896 OsI_28028 OsI_28028 OsI_27848 OsI_27848 OsI_26821 OsI_26821 OsI_23076 OsI_23076 LSM5 LSM5 LSM8 LSM8 OsI_19425 OsI_19425 OsI_16257 OsI_16257 LSM1 LSM1 OsI_15663 OsI_15663 OsI_06076 OsI_06076 OsI_07364 OsI_07364 OsI_07219 OsI_07219 OsI_05681 OsI_05681 OsI_05466 OsI_05466 LSM4 LSM4 OsI_05349 OsI_05349 OsI_27814 OsI_27814 OsI_24156 OsI_24156 OsI_12008 OsI_12008 OsI_10698 OsI_10698 OsI_07847 OsI_07847 LSM3 LSM3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_00099Uncharacterized protein. (621 aa)
OsI_36896Sm domain-containing protein. (86 aa)
OsI_28028Sm domain-containing protein. (98 aa)
OsI_27848Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (120 aa)
OsI_26821Small nuclear ribonucleoprotein G. (80 aa)
OsI_23076Uncharacterized protein. (688 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (136 aa)
OsI_19425Small nuclear ribonucleoprotein Sm D2. (105 aa)
OsI_16257Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (170 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (129 aa)
OsI_15663Sm domain-containing protein. (97 aa)
OsI_06076Sm domain-containing protein. (146 aa)
OsI_07364Sm domain-containing protein. (97 aa)
OsI_07219LsmAD domain-containing protein. (600 aa)
OsI_05681Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
OsI_05466Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
OsI_05349Small nuclear ribonucleoprotein Sm D2. (96 aa)
OsI_27814Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (79 aa)
OsI_24156Sm domain-containing protein. (116 aa)
OsI_12008Small nuclear ribonucleoprotein G. (80 aa)
OsI_10698Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
OsI_07847Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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