46 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_09793	Homeobox domain-containing protein. (591 aa)
	OsI_20205	Ubiquitin-like domain-containing protein. (83 aa)
	OsI_23897	Uncharacterized protein. (323 aa)
	OsI_21328	Homeobox domain-containing protein. (524 aa)
	OsI_23385	Homeobox domain-containing protein. (615 aa)
	OsI_23591	WD_REPEATS_REGION domain-containing protein. (302 aa)
	OsI_28664	Uncharacterized protein. (212 aa)
	OsI_31940	Uncharacterized protein; Belongs to the cyclin family. (257 aa)
	OsI_34140	Ubiquitin-like domain-containing protein. (81 aa)
	OsI_34463	Homeobox domain-containing protein. (587 aa)
	OsI_09015	SKIP_SNW domain-containing protein. (607 aa)
	OsI_35198	Homeobox domain-containing protein. (678 aa)
	OsI_39226	ELK domain-containing protein. (90 aa)
	OSH15	Homeobox protein knotted-1-like 12; Probable transcription factor that may be involved in shoot formation during embryogenesis. (355 aa)
	OsI_35185	Uncharacterized protein; Belongs to the cyclin family. (490 aa)
	OsI_13374	KNOX1 domain-containing protein. (135 aa)
	OsI_13373	Uncharacterized protein. (357 aa)
	OsI_13031	Homeobox domain-containing protein. (675 aa)
	OsI_11568	Uncharacterized protein. (90 aa)
	OsI_12975	Uncharacterized protein. (336 aa)
	OsI_12972	Uncharacterized protein. (337 aa)
	OsI_10052	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (379 aa)
	OsI_09790	Uncharacterized protein. (306 aa)
	OsI_13687	Uncharacterized protein. (357 aa)
	OsI_01553	Uncharacterized protein. (169 aa)
	OsI_01687	Ubiquitin-like domain-containing protein. (155 aa)
	OsI_03264	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (316 aa)
	qSH-1	Putative transcription factor qSH-1. (612 aa)
	OsI_13685	Uncharacterized protein. (559 aa)
	OsI_06117	Uncharacterized protein. (250 aa)
	OsI_07037	Uncharacterized protein; Belongs to the cyclin family. (616 aa)
	OsI_05739	Uncharacterized protein; Belongs to the cyclin family. (407 aa)
	OsI_06432	Homeobox domain-containing protein. (539 aa)
	OsI_13376	Uncharacterized protein. (347 aa)
	OsI_06306	WD_REPEATS_REGION domain-containing protein. (342 aa)
	OsI_01554	Homeobox domain-containing protein. (110 aa)
	OsI_39262	Homeobox domain-containing protein. (647 aa)
	OsI_37556	Homeobox domain-containing protein. (654 aa)
	OsI_28067	Ubiquitin-like domain-containing protein. (253 aa)
	OsI_22174	SKIP_SNW domain-containing protein. (541 aa)
	OsI_20184	Homeobox domain-containing protein. (600 aa)
	OSH71	Homeobox protein knotted-1-like 10; Probable transcription factor that may be involved in shoot formation during embryogenesis. (311 aa)
	OsI_13400	Homeobox domain-containing protein. (803 aa)
	OsI_13030	Homeobox domain-containing protein. (345 aa)
	OsI_12973	Uncharacterized protein. (194 aa)
	OsI_10151	Homeobox domain-containing protein. (600 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSH15	OsI_09793	O65034	A2XBX6	Homeobox protein knotted-1-like 12; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.403
OSH15	OsI_20184	O65034	A2Y5B7	Homeobox protein knotted-1-like 12; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.400
OSH15	OsI_21328	O65034	B8B1J2	Homeobox protein knotted-1-like 12; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.407
OSH15	OsI_34463	O65034	B8BI09	Homeobox protein knotted-1-like 12; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.410
OSH15	qSH-1	O65034	A2WWZ8	Homeobox protein knotted-1-like 12; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Putative transcription factor qSH-1.	0.438
OSH71	OsI_09793	A2Y007	A2XBX6	Homeobox protein knotted-1-like 10; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.405
OSH71	OsI_20184	A2Y007	A2Y5B7	Homeobox protein knotted-1-like 10; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.460
OSH71	OsI_21328	A2Y007	B8B1J2	Homeobox protein knotted-1-like 10; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.409
OSH71	OsI_34463	A2Y007	B8BI09	Homeobox protein knotted-1-like 10; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Homeobox domain-containing protein.	0.413
OSH71	qSH-1	A2Y007	A2WWZ8	Homeobox protein knotted-1-like 10; Probable transcription factor that may be involved in shoot formation during embryogenesis.	Putative transcription factor qSH-1.	0.461
OsI_01554	OsI_20184	B8A6Q3	A2Y5B7	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
OsI_01554	qSH-1	B8A6Q3	A2WWZ8	Homeobox domain-containing protein.	Putative transcription factor qSH-1.	0.406
OsI_01687	OsI_34140	A2WPB5	B8BHM2	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.876
OsI_05739	OsI_31940	B8AH26	B8BDA4	Uncharacterized protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.781
OsI_06117	OsI_12973	B8AIX3	A2XKJ3	Uncharacterized protein.	Uncharacterized protein.	0.552
OsI_06117	OsI_39226	B8AIX3	B8BN54	Uncharacterized protein.	ELK domain-containing protein.	0.452
OsI_06306	OsI_23591	B8ADV1	B8B4B7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.943
OsI_07037	OsI_31940	B8AH65	B8BDA4	Uncharacterized protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.781
OsI_09790	OsI_10151	B8ALY8	A2XCW6	Uncharacterized protein.	Homeobox domain-containing protein.	0.422
OsI_09790	OsI_12972	B8ALY8	B8AP43	Uncharacterized protein.	Uncharacterized protein.	0.479

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