13 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_01687	Ubiquitin-like domain-containing protein. (155 aa)
	OsI_20205	Ubiquitin-like domain-containing protein. (83 aa)
	OsI_17175	Uncharacterized protein. (710 aa)
	OsI_08852	Ncstrn_small domain-containing protein. (671 aa)
	OsI_01379	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (478 aa)
	OsI_05289	Uncharacterized protein. (156 aa)
	OsI_02244	Uncharacterized protein. (420 aa)
	OsI_28067	Ubiquitin-like domain-containing protein. (253 aa)
	OsI_14143	Uncharacterized protein. (415 aa)
	OsI_12543	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (458 aa)
	OsI_02242	Uncharacterized protein. (118 aa)
	OsI_34140	Ubiquitin-like domain-containing protein. (81 aa)
	OsI_34022	Uncharacterized protein. (399 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_01379	OsI_05289	B8ACI9	B8A9J7	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.993
OsI_01379	OsI_08852	B8ACI9	B8AI33	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Ncstrn_small domain-containing protein.	0.995
OsI_01687	OsI_02242	A2WPB5	A2WQV6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.586
OsI_01687	OsI_02244	A2WPB5	B8A9B7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.586
OsI_01687	OsI_34140	A2WPB5	B8BHM2	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.876
OsI_02242	OsI_01687	A2WQV6	A2WPB5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02242	OsI_20205	A2WQV6	B8AYV2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02242	OsI_28067	A2WQV6	A2YRX0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02242	OsI_34140	A2WQV6	B8BHM2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02244	OsI_01687	B8A9B7	A2WPB5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02244	OsI_20205	B8A9B7	B8AYV2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02244	OsI_28067	B8A9B7	A2YRX0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_02244	OsI_34140	B8A9B7	B8BHM2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
OsI_05289	OsI_01379	B8A9J7	B8ACI9	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.993
OsI_05289	OsI_08852	B8A9J7	B8AI33	Uncharacterized protein.	Ncstrn_small domain-containing protein.	0.999
OsI_05289	OsI_12543	B8A9J7	A2XJB8	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.993
OsI_08852	OsI_01379	B8AI33	B8ACI9	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.995
OsI_08852	OsI_05289	B8AI33	B8A9J7	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.999
OsI_08852	OsI_12543	B8AI33	A2XJB8	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.995
OsI_12543	OsI_05289	A2XJB8	B8A9J7	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.993

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About