51 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_24654	Rep_fac-A_C domain-containing protein. (298 aa)
	OsI_37949	Uncharacterized protein. (306 aa)
	OsI_38467	Uncharacterized protein. (202 aa)
	OsI_36544	Replication factor C subunit 1. (1014 aa)
	OsI_35669	DNA_pol3_gamma3 domain-containing protein. (860 aa)
	OsI_34758	Uncharacterized protein. (648 aa)
	OsI_34140	Ubiquitin-like domain-containing protein. (81 aa)
	OsI_34031	NAC domain-containing protein. (271 aa)
	OsI_28022	Uncharacterized protein. (705 aa)
	OsI_27885	NAC domain-containing protein. (738 aa)
	OsI_27632	AAA domain-containing protein. (811 aa)
	OsI_25344	Uncharacterized protein. (316 aa)
	OsI_25208	DUF223 domain-containing protein. (376 aa)
	OsI_27267	DNA polymerase. (1797 aa)
	OsI_23219	Rep_fac-A_C domain-containing protein. (667 aa)
	OsI_24262	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1100 aa)
	OsI_20723	DNA_pol3_gamma3 domain-containing protein. (1079 aa)
	OsI_20370	Uncharacterized protein. (210 aa)
	OsI_20205	Ubiquitin-like domain-containing protein. (83 aa)
	OsI_18166	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (988 aa)
	OsI_17026	AAA domain-containing protein. (335 aa)
	OsI_10837	AAA domain-containing protein. (1250 aa)
	OsI_09136	AAA domain-containing protein. (361 aa)
	OsI_07319	Rep_fac-A_C domain-containing protein. (431 aa)
	OsI_08618	Uncharacterized protein. (729 aa)
	OsI_09388	NAC domain-containing protein. (331 aa)
	OsI_04360	Uncharacterized protein. (397 aa)
	OsI_03625	DNA_pol3_gamma3 domain-containing protein. (815 aa)
	OsI_05060	Uncharacterized protein. (157 aa)
	OsI_38033	Uncharacterized protein. (195 aa)
	OsI_38032	AAA domain-containing protein. (950 aa)
	OsI_37801	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	OsI_37665	AAA domain-containing protein. (339 aa)
	OsI_37160	Uncharacterized protein. (567 aa)
	OsI_33558	NAC domain-containing protein. (543 aa)
	OsI_28067	Ubiquitin-like domain-containing protein. (253 aa)
	OsI_21263	NAC domain-containing protein. (683 aa)
	OsI_20371	Uncharacterized protein. (261 aa)
	OsI_16639	NAC domain-containing protein. (278 aa)
	OsI_14707	Uncharacterized protein. (455 aa)
	OsI_13856	AAA domain-containing protein. (354 aa)
	OsI_11178	Uncharacterized protein. (116 aa)
	OsI_11070	Uncharacterized protein. (135 aa)
	OsI_10518	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	OsI_09678	NAC domain-containing protein. (295 aa)
	OsI_09344	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	OsI_09147	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (658 aa)
	OsI_05697	NAC domain-containing protein. (301 aa)
	OsI_02952	Uncharacterized protein. (410 aa)
	OsI_01687	Ubiquitin-like domain-containing protein. (155 aa)
	OsI_00350	Uncharacterized protein. (223 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00350	OsI_01687	A2WKJ7	A2WPB5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_03625	A2WKJ7	B8A913	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_08618	A2WKJ7	B8AH94	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00350	OsI_09136	A2WKJ7	B8AJG5	Uncharacterized protein.	AAA domain-containing protein.	0.658
OsI_00350	OsI_09344	A2WKJ7	A2XAR1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.829
OsI_00350	OsI_10837	A2WKJ7	B8AKC3	Uncharacterized protein.	AAA domain-containing protein.	0.715
OsI_00350	OsI_13856	A2WKJ7	A2XMT5	Uncharacterized protein.	AAA domain-containing protein.	0.674
OsI_00350	OsI_17026	A2WKJ7	B8AT41	Uncharacterized protein.	AAA domain-containing protein.	0.675
OsI_00350	OsI_20205	A2WKJ7	B8AYV2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_20723	A2WKJ7	B8B072	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_24262	A2WKJ7	B8B1U1	Uncharacterized protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.542
OsI_00350	OsI_25344	A2WKJ7	B8B8E3	Uncharacterized protein.	Uncharacterized protein.	0.641
OsI_00350	OsI_27267	A2WKJ7	B8B5T5	Uncharacterized protein.	DNA polymerase.	0.641
OsI_00350	OsI_27632	A2WKJ7	B8BAD4	Uncharacterized protein.	AAA domain-containing protein.	0.511
OsI_00350	OsI_28067	A2WKJ7	A2YRX0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_34140	A2WKJ7	B8BHM2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_34758	A2WKJ7	B8BID9	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00350	OsI_35669	A2WKJ7	B8BJV7	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_36544	A2WKJ7	B8BL55	Uncharacterized protein.	Replication factor C subunit 1.	0.715
OsI_00350	OsI_37665	A2WKJ7	A2ZIL4	Uncharacterized protein.	AAA domain-containing protein.	0.511

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