34 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdc48	AAA-ATPase. (809 aa)
	OsI_34140	Ubiquitin-like domain-containing protein. (81 aa)
	OsI_33786	Uncharacterized protein. (755 aa)
	OsI_28384	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (537 aa)
	OsI_29256	Uncharacterized protein. (837 aa)
	OsI_30059	Ubiquitin thioesterase. (324 aa)
	OsI_29973	Uncharacterized protein. (433 aa)
	OsI_21607	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily. (648 aa)
	OsI_20205	Ubiquitin-like domain-containing protein. (83 aa)
	OsI_19738	AAA domain-containing protein; Belongs to the AAA ATPase family. (298 aa)
	OsI_14770	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (563 aa)
	OsI_16498	Uncharacterized protein; Belongs to the AAA ATPase family. (576 aa)
	OsI_10167	RING-type domain-containing protein. (478 aa)
	OsI_07450	Uncharacterized protein. (215 aa)
	OsI_07449	Uncharacterized protein. (420 aa)
	OsI_07442	Uncharacterized protein. (450 aa)
	OsI_07441	Uncharacterized protein. (515 aa)
	OsI_07416	Uncharacterized protein. (511 aa)
	OsI_08877	AAA domain-containing protein; Belongs to the AAA ATPase family. (612 aa)
	OsI_05919	Translation factor GUF1 homolog, chloroplastic; Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily. (636 aa)
	OsI_06773	Tr-type G domain-containing protein. (661 aa)
	OsI_06666	ANK_REP_REGION domain-containing protein. (455 aa)
	OsI_33783	CDC48_N domain-containing protein. (75 aa)
	OsI_28067	Ubiquitin-like domain-containing protein. (253 aa)
	OsI_27502	RING-type domain-containing protein. (442 aa)
	OsI_21178	Uncharacterized protein. (500 aa)
	OsI_17710	Uncharacterized protein. (498 aa)
	OsI_16394	RING-type domain-containing protein. (285 aa)
	OsI_10924	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (540 aa)
	OsI_07390	OTU domain-containing protein. (449 aa)
	OsI_07389	Uncharacterized protein. (207 aa)
	OsI_05978	OTU domain-containing protein. (208 aa)
	OsI_03761	Tr-type G domain-containing protein. (664 aa)
	OsI_01687	Ubiquitin-like domain-containing protein. (155 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_01687	OsI_03761	A2WPB5	A2WV48	Ubiquitin-like domain-containing protein.	Tr-type G domain-containing protein.	0.590
OsI_01687	OsI_05919	A2WPB5	B8AI54	Ubiquitin-like domain-containing protein.	Translation factor GUF1 homolog, chloroplastic; Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.	0.630
OsI_01687	OsI_05978	A2WPB5	A2X1A0	Ubiquitin-like domain-containing protein.	OTU domain-containing protein.	0.874
OsI_01687	OsI_06666	A2WPB5	B8AFB6	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.781
OsI_01687	OsI_06773	A2WPB5	B8AFM9	Ubiquitin-like domain-containing protein.	Tr-type G domain-containing protein.	0.590
OsI_01687	OsI_07389	A2WPB5	A2X5B8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_07390	A2WPB5	A2X5B9	Ubiquitin-like domain-containing protein.	OTU domain-containing protein.	0.444
OsI_01687	OsI_07416	A2WPB5	B8AIN5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_07441	A2WPB5	B8AIP4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_07442	A2WPB5	B8AIP5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_07449	A2WPB5	B8AIP9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_07450	A2WPB5	B8AIQ5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_08877	A2WPB5	B8AIG7	Ubiquitin-like domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.781
OsI_01687	OsI_10167	A2WPB5	B8AP98	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.525
OsI_01687	OsI_10924	A2WPB5	A2XF08	Ubiquitin-like domain-containing protein.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	0.590
OsI_01687	OsI_14770	A2WPB5	B8AUZ3	Ubiquitin-like domain-containing protein.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	0.590
OsI_01687	OsI_16394	A2WPB5	A2XUV7	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.525
OsI_01687	OsI_16498	A2WPB5	B8AR97	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.781
OsI_01687	OsI_17710	A2WPB5	A2XYD2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
OsI_01687	OsI_19738	A2WPB5	B8AXP8	Ubiquitin-like domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.781

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