STRINGSTRING
OsI_05172 OsI_05172 OsI_05185 OsI_05185 OsI_04266 OsI_04266 OsI_04360 OsI_04360 OsI_00057 OsI_00057 OsI_00441 OsI_00441 OsI_00530 OsI_00530 OsI_00630 OsI_00630 OsI_09388 OsI_09388 OsI_07099 OsI_07099 OsI_07185 OsI_07185 OsI_07292 OsI_07292 OsI_07303 OsI_07303 OsI_07319 OsI_07319 OsI_37160 OsI_37160 OsI_00350 OsI_00350 H2B.3 H2B.3 H2B.4 H2B.4 OsI_00433 OsI_00433 OsI_00434 OsI_00434 H2B.10 H2B.10 H2B.8 H2B.8 H2B.7 H2B.7 H2B.6 H2B.6 H2B.5 H2B.5 OsI_01538 OsI_01538 OsI_01539 OsI_01539 OsI_01687 OsI_01687 OsI_02095 OsI_02095 OsI_02464 OsI_02464 OsI_02469 OsI_02469 OsI_02952 OsI_02952 OsI_02995 OsI_02995 OsI_03140 OsI_03140 OsI_03144 OsI_03144 OsI_03659 OsI_03659 OsI_03660 OsI_03660 H2B.11 H2B.11 OsI_05427 OsI_05427 OsI_05697 OsI_05697 OsI_06733 OsI_06733 OsI_05060 OsI_05060 OsI_04810 OsI_04810 OsI_38408 OsI_38408 OsI_37921 OsI_37921 OsI_37920 OsI_37920 OsI_36975 OsI_36975 OsI_35888 OsI_35888 OsI_33558 OsI_33558 OsI_32069 OsI_32069 OsI_31487 OsI_31487 OsI_31486 OsI_31486 OsI_30353 OsI_30353 OsI_11178 OsI_11178 OsI_11070 OsI_11070 OsI_010709 OsI_010709 OsI_10518 OsI_10518 OsI_09678 OsI_09678 OsI_09175 OsI_09175 OsI_09147 OsI_09147 OsI_09037 OsI_09037 OsI_07680 OsI_07680 OsI_07184 OsI_07184 OsI_30712 OsI_30712 OsI_32495 OsI_32495 OsI_34031 OsI_34031 NBS1 NBS1 OsI_34140 OsI_34140 OsI_35089 OsI_35089 OsI_35425 OsI_35425 OsI_35576 OsI_35576 OsI_36814 OsI_36814 OsI_37440 OsI_37440 OsI_38467 OsI_38467 OsI_37949 OsI_37949 OsI_12160 OsI_12160 OsI_11010 OsI_11010 OsI_12458 OsI_12458 OsI_12723 OsI_12723 OsI_12760 OsI_12760 OsI_10148 OsI_10148 OsI_11538 OsI_11538 SRT1 SRT1 OsI_16624 OsI_16624 OsI_15951 OsI_15951 OsI_15961 OsI_15961 OsI_16386 OsI_16386 OsI_18166 OsI_18166 OsI_18249 OsI_18249 OsI_18479 OsI_18479 OsI_18591 OsI_18591 OsI_20205 OsI_20205 OsI_20231 OsI_20231 OsI_20252 OsI_20252 OsI_18875 OsI_18875 OsI_20370 OsI_20370 OsI_22537 OsI_22537 OsI_22539 OsI_22539 OsI_24326 OsI_24326 OsI_24505 OsI_24505 OsI_21689 OsI_21689 OsI_23219 OsI_23219 OsI_27361 OsI_27361 OsI_24648 OsI_24648 OsI_24649 OsI_24649 OsI_24654 OsI_24654 OsI_25208 OsI_25208 OsI_27885 OsI_27885 OsI_27932 OsI_27932 OsI_28022 OsI_28022 OsI_28202 OsI_28202 OsI_29697 OsI_29697 OsI_30540 OsI_30540 OsI_30118 OsI_30118 H2B.2 H2B.2 OsI_29431 OsI_29431 OsI_28067 OsI_28067 OsI_27675 OsI_27675 OsI_27420 OsI_27420 OsI_26637 OsI_26637 OsI_25432 OsI_25432 OsI_24650 OsI_24650 OsI_24647 OsI_24647 OsI_023634 OsI_023634 OsI_22652 OsI_22652 OsI_21263 OsI_21263 H2B.9 H2B.9 OsI_20371 OsI_20371 OsI_18214 OsI_18214 OsI_18204 OsI_18204 OsI_17884 OsI_17884 OsI_17160 OsI_17160 OsI_16639 OsI_16639 OsI_14707 OsI_14707 OsI_14692 OsI_14692 OsI_14456 OsI_14456 OsI_11933 OsI_11933 OsI_11217 OsI_11217 OsI_05156 OsI_05156
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_05172Uncharacterized protein. (198 aa)
OsI_05185ERCC4 domain-containing protein. (507 aa)
OsI_04266LOB domain-containing protein. (251 aa)
OsI_04360Uncharacterized protein. (397 aa)
OsI_00057Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2732 aa)
OsI_00441F-box domain-containing protein. (431 aa)
OsI_00530Tower domain-containing protein. (1484 aa)
OsI_00630DUF1767 domain-containing protein. (420 aa)
OsI_09388NAC domain-containing protein. (331 aa)
OsI_07099Uncharacterized protein. (413 aa)
OsI_07185Toprim domain-containing protein. (968 aa)
OsI_07292Uncharacterized protein. (178 aa)
OsI_07303Zinc-hook domain-containing protein. (1323 aa)
OsI_07319Rep_fac-A_C domain-containing protein. (431 aa)
OsI_37160Uncharacterized protein. (567 aa)
OsI_00350Uncharacterized protein. (223 aa)
H2B.3Histone H2B.3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.4Histone H2B.4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
OsI_00433F-box domain-containing protein. (384 aa)
OsI_00434F-box domain-containing protein. (373 aa)
H2B.10Histone H2B.10; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.8Histone H2B.8; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.7Histone H2B.7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.6Histone H2B.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.5Histone H2B.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (155 aa)
OsI_01538Uncharacterized protein. (288 aa)
OsI_015393'-5' exonuclease domain-containing protein. (201 aa)
OsI_01687Ubiquitin-like domain-containing protein. (155 aa)
OsI_02095Histone domain-containing protein; Belongs to the histone H2B family. (102 aa)
OsI_02464Uncharacterized protein. (321 aa)
OsI_02469Uncharacterized protein. (156 aa)
OsI_02952Uncharacterized protein. (410 aa)
OsI_02995Uncharacterized protein. (360 aa)
OsI_031403'-5' exonuclease domain-containing protein. (357 aa)
OsI_031443'-5' exonuclease domain-containing protein. (199 aa)
OsI_036593'-5' exonuclease domain-containing protein. (208 aa)
OsI_036603'-5' exonuclease domain-containing protein. (208 aa)
H2B.11Histone H2B.11; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (139 aa)
OsI_05427Uncharacterized protein. (377 aa)
OsI_05697NAC domain-containing protein. (301 aa)
OsI_06733Uncharacterized protein. (153 aa)
OsI_05060Uncharacterized protein. (157 aa)
OsI_04810Uncharacterized protein; Belongs to the RecA family. (339 aa)
OsI_38408Uncharacterized protein; Belongs to the RecA family. (294 aa)
OsI_37921Uncharacterized protein. (1040 aa)
OsI_37920Uncharacterized protein. (1121 aa)
OsI_36975ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (588 aa)
OsI_35888Uncharacterized protein; Belongs to the RecA family. (430 aa)
OsI_33558NAC domain-containing protein. (543 aa)
OsI_32069Uncharacterized protein. (131 aa)
OsI_31487Uncharacterized protein. (137 aa)
OsI_31486Pectinesterase. (413 aa)
OsI_30353RECA_2 domain-containing protein. (280 aa)
OsI_11178Uncharacterized protein. (116 aa)
OsI_11070Uncharacterized protein. (135 aa)
OsI_010709Histone H2B.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
OsI_10518Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
OsI_09678NAC domain-containing protein. (295 aa)
OsI_09175ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (692 aa)
OsI_09147Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (658 aa)
OsI_09037CCHC-type domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (324 aa)
OsI_07680RECA_2 domain-containing protein. (290 aa)
OsI_07184zf-GRF domain-containing protein. (103 aa)
OsI_30712Serine/threonine-protein phosphatase. (253 aa)
OsI_32495Uncharacterized protein. (787 aa)
OsI_34031NAC domain-containing protein. (271 aa)
NBS1Nijmegen breakage syndrome 1 protein; Component of the MRE11-RAD50-NBN complex (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex may be involved in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, and cell cycle checkpoint control. Functions also in the very early stages of meiosis. (560 aa)
OsI_34140Ubiquitin-like domain-containing protein. (81 aa)
OsI_35089GIY-YIG domain-containing protein. (204 aa)
OsI_35425Uncharacterized protein. (978 aa)
OsI_355763'-5' exonuclease domain-containing protein. (186 aa)
OsI_36814DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (339 aa)
OsI_37440GIY-YIG domain-containing protein. (164 aa)
OsI_38467Uncharacterized protein. (202 aa)
OsI_37949Uncharacterized protein. (306 aa)
OsI_12160Uncharacterized protein. (677 aa)
OsI_11010BHLH domain-containing protein. (597 aa)
OsI_12458UvrD_C_2 domain-containing protein. (565 aa)
OsI_12723DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (339 aa)
OsI_12760Uncharacterized protein; Belongs to the RecA family. (436 aa)
OsI_10148DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (981 aa)
OsI_11538Uncharacterized protein; Belongs to the rad9 family. (447 aa)
SRT1NAD-dependent protein deacetylase SRT1; NAD-dependent protein deacetylase. Has deacetylase activity towards H3K9Ac. May have a function in the safeguard against genome instabiliy and DNA damage to ensure plant cell growth. (484 aa)
OsI_16624Pectinesterase domain-containing protein. (191 aa)
OsI_15951HRDC domain-containing protein. (346 aa)
OsI_15961Uncharacterized protein. (2505 aa)
OsI_16386Uncharacterized protein. (926 aa)
OsI_18166Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (988 aa)
OsI_18249RECA_2 domain-containing protein. (363 aa)
OsI_18479Uncharacterized protein. (826 aa)
OsI_18591LOB domain-containing protein. (208 aa)
OsI_20205Ubiquitin-like domain-containing protein. (83 aa)
OsI_20231Histone H2B; Belongs to the histone H2B family. (95 aa)
OsI_20252PWWP domain-containing protein. (1254 aa)
OsI_18875Uncharacterized protein. (1254 aa)
OsI_20370Uncharacterized protein. (210 aa)
OsI_22537zf-C4_Topoisom domain-containing protein. (301 aa)
OsI_22539Toprim domain-containing protein. (888 aa)
OsI_24326Uncharacterized protein. (162 aa)
OsI_24505Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2673 aa)
OsI_21689Uncharacterized protein. (285 aa)
OsI_23219Rep_fac-A_C domain-containing protein. (667 aa)
OsI_27361ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (905 aa)
OsI_246483'-5' exonuclease domain-containing protein. (140 aa)
OsI_246493'-5' exonuclease domain-containing protein. (159 aa)
OsI_24654Rep_fac-A_C domain-containing protein. (298 aa)
OsI_25208DUF223 domain-containing protein. (376 aa)
OsI_27885NAC domain-containing protein. (738 aa)
OsI_27932Uncharacterized protein. (122 aa)
OsI_28022Uncharacterized protein. (705 aa)
OsI_28202F-box domain-containing protein. (304 aa)
OsI_29697Histone H2B; Belongs to the histone H2B family. (56 aa)
OsI_30540DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (897 aa)
OsI_30118Uncharacterized protein. (138 aa)
H2B.2Histone H2B.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (150 aa)
OsI_29431Pectinesterase. (663 aa)
OsI_28067Ubiquitin-like domain-containing protein. (253 aa)
OsI_27675Uncharacterized protein. (527 aa)
OsI_27420Uncharacterized protein. (1335 aa)
OsI_26637zf-GRF domain-containing protein. (149 aa)
OsI_25432Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (444 aa)
OsI_246503'-5' exonuclease domain-containing protein. (496 aa)
OsI_246473'-5' exonuclease domain-containing protein. (159 aa)
OsI_023634Serine/threonine-protein kinase ATR; Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism (By similarity); Belongs to the PI3/PI4-kinase family. ATM subfamily. (2710 aa)
OsI_22652Uncharacterized protein. (297 aa)
OsI_21263NAC domain-containing protein. (683 aa)
H2B.9Histone H2B.9; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
OsI_20371Uncharacterized protein. (261 aa)
OsI_18214Uncharacterized protein. (468 aa)
OsI_18204Uncharacterized protein. (359 aa)
OsI_17884Uncharacterized protein. (163 aa)
OsI_17160Uncharacterized protein. (1269 aa)
OsI_16639NAC domain-containing protein. (278 aa)
OsI_14707Uncharacterized protein. (455 aa)
OsI_146923'-5' exonuclease domain-containing protein. (256 aa)
OsI_144563'-5' exonuclease domain-containing protein. (231 aa)
OsI_11933Pectinesterase. (603 aa)
OsI_11217Uncharacterized protein. (1412 aa)
OsI_05156Uncharacterized protein; Belongs to the RecA family. (410 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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