51 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_37949	Uncharacterized protein. (306 aa)
	OsI_38467	Uncharacterized protein. (202 aa)
	OsI_36544	Replication factor C subunit 1. (1014 aa)
	OsI_35669	DNA_pol3_gamma3 domain-containing protein. (860 aa)
	OsI_34758	Uncharacterized protein. (648 aa)
	OsI_34140	Ubiquitin-like domain-containing protein. (81 aa)
	OsI_34031	NAC domain-containing protein. (271 aa)
	OsI_28022	Uncharacterized protein. (705 aa)
	OsI_27932	Uncharacterized protein. (122 aa)
	OsI_27885	NAC domain-containing protein. (738 aa)
	OsI_27632	AAA domain-containing protein. (811 aa)
	OsI_25208	DUF223 domain-containing protein. (376 aa)
	OsI_24654	Rep_fac-A_C domain-containing protein. (298 aa)
	OsI_23219	Rep_fac-A_C domain-containing protein. (667 aa)
	OsI_20723	DNA_pol3_gamma3 domain-containing protein. (1079 aa)
	OsI_20370	Uncharacterized protein. (210 aa)
	OsI_20205	Ubiquitin-like domain-containing protein. (83 aa)
	OsI_18166	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (988 aa)
	OsI_17026	AAA domain-containing protein. (335 aa)
	OsI_12160	Uncharacterized protein. (677 aa)
	OsI_10837	AAA domain-containing protein. (1250 aa)
	OsI_09136	AAA domain-containing protein. (361 aa)
	OsI_07319	Rep_fac-A_C domain-containing protein. (431 aa)
	OsI_08618	Uncharacterized protein. (729 aa)
	OsI_09388	NAC domain-containing protein. (331 aa)
	OsI_04360	Uncharacterized protein. (397 aa)
	OsI_03625	DNA_pol3_gamma3 domain-containing protein. (815 aa)
	OsI_05060	Uncharacterized protein. (157 aa)
	OsI_38033	Uncharacterized protein. (195 aa)
	OsI_38032	AAA domain-containing protein. (950 aa)
	OsI_37801	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	OsI_37665	AAA domain-containing protein. (339 aa)
	OsI_37160	Uncharacterized protein. (567 aa)
	OsI_33558	NAC domain-containing protein. (543 aa)
	OsI_32069	Uncharacterized protein. (131 aa)
	OsI_30118	Uncharacterized protein. (138 aa)
	OsI_28067	Ubiquitin-like domain-containing protein. (253 aa)
	OsI_21263	NAC domain-containing protein. (683 aa)
	OsI_20371	Uncharacterized protein. (261 aa)
	OsI_16639	NAC domain-containing protein. (278 aa)
	OsI_14707	Uncharacterized protein. (455 aa)
	OsI_13856	AAA domain-containing protein. (354 aa)
	OsI_11178	Uncharacterized protein. (116 aa)
	OsI_11070	Uncharacterized protein. (135 aa)
	OsI_10518	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	OsI_09678	NAC domain-containing protein. (295 aa)
	OsI_09147	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (658 aa)
	OsI_05697	NAC domain-containing protein. (301 aa)
	OsI_02952	Uncharacterized protein. (410 aa)
	OsI_01687	Ubiquitin-like domain-containing protein. (155 aa)
	OsI_00350	Uncharacterized protein. (223 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00350	OsI_01687	A2WKJ7	A2WPB5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_03625	A2WKJ7	B8A913	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_08618	A2WKJ7	B8AH94	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00350	OsI_09136	A2WKJ7	B8AJG5	Uncharacterized protein.	AAA domain-containing protein.	0.658
OsI_00350	OsI_10837	A2WKJ7	B8AKC3	Uncharacterized protein.	AAA domain-containing protein.	0.715
OsI_00350	OsI_12160	A2WKJ7	B8AKF3	Uncharacterized protein.	Uncharacterized protein.	0.563
OsI_00350	OsI_13856	A2WKJ7	A2XMT5	Uncharacterized protein.	AAA domain-containing protein.	0.674
OsI_00350	OsI_17026	A2WKJ7	B8AT41	Uncharacterized protein.	AAA domain-containing protein.	0.675
OsI_00350	OsI_20205	A2WKJ7	B8AYV2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_20723	A2WKJ7	B8B072	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_27632	A2WKJ7	B8BAD4	Uncharacterized protein.	AAA domain-containing protein.	0.511
OsI_00350	OsI_28067	A2WKJ7	A2YRX0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_34140	A2WKJ7	B8BHM2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_34758	A2WKJ7	B8BID9	Uncharacterized protein.	Uncharacterized protein.	0.674
OsI_00350	OsI_35669	A2WKJ7	B8BJV7	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_36544	A2WKJ7	B8BL55	Uncharacterized protein.	Replication factor C subunit 1.	0.715
OsI_00350	OsI_37665	A2WKJ7	A2ZIL4	Uncharacterized protein.	AAA domain-containing protein.	0.511
OsI_00350	OsI_37801	A2WKJ7	A2ZIZ6	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.511
OsI_00350	OsI_38032	A2WKJ7	A2ZJN8	Uncharacterized protein.	AAA domain-containing protein.	0.511
OsI_00350	OsI_38033	A2WKJ7	A2ZJN9	Uncharacterized protein.	Uncharacterized protein.	0.511

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