45 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_24505	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2673 aa)
	OsI_23219	Rep_fac-A_C domain-containing protein. (667 aa)
	OsI_21850	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (949 aa)
	OsI_24654	Rep_fac-A_C domain-containing protein. (298 aa)
	OsI_24939	Uncharacterized protein. (1489 aa)
	OsI_25208	DUF223 domain-containing protein. (376 aa)
	OsI_27885	NAC domain-containing protein. (738 aa)
	OsI_28022	Uncharacterized protein. (705 aa)
	OsI_34031	NAC domain-containing protein. (271 aa)
	OsI_34140	Ubiquitin-like domain-containing protein. (81 aa)
	OsI_20205	Ubiquitin-like domain-containing protein. (83 aa)
	OsI_18591	LOB domain-containing protein. (208 aa)
	OsI_18166	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (988 aa)
	OsI_19427	Uncharacterized protein. (334 aa)
	OsI_13372	Uncharacterized protein. (308 aa)
	OsI_11010	BHLH domain-containing protein. (597 aa)
	OsI_07319	Rep_fac-A_C domain-containing protein. (431 aa)
	OsI_09388	NAC domain-containing protein. (331 aa)
	OsI_34337	HHH_2 domain-containing protein. (430 aa)
	OsI_35089	GIY-YIG domain-containing protein. (204 aa)
	OsI_37440	GIY-YIG domain-containing protein. (164 aa)
	OsI_38467	Uncharacterized protein. (202 aa)
	OsI_37949	Uncharacterized protein. (306 aa)
	OsI_04360	Uncharacterized protein. (397 aa)
	OsI_04266	LOB domain-containing protein. (251 aa)
	OsI_05060	Uncharacterized protein. (157 aa)
	OsI_37160	Uncharacterized protein. (567 aa)
	OsI_33558	NAC domain-containing protein. (543 aa)
	OsI_28067	Ubiquitin-like domain-containing protein. (253 aa)
	OsI_25432	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (444 aa)
	OsI_023634	Serine/threonine-protein kinase ATR; Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism (By similarity); Belongs to the PI3/PI4-kinase family. ATM subfamily. (2710 aa)
	OsI_21263	NAC domain-containing protein. (683 aa)
	OsI_20371	Uncharacterized protein. (261 aa)
	OsI_16639	NAC domain-containing protein. (278 aa)
	OsI_14707	Uncharacterized protein. (455 aa)
	OsI_11178	Uncharacterized protein. (116 aa)
	OsI_11070	Uncharacterized protein. (135 aa)
	OsI_10518	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	OsI_09678	NAC domain-containing protein. (295 aa)
	OsI_09147	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (658 aa)
	OsI_05697	NAC domain-containing protein. (301 aa)
	OsI_02952	Uncharacterized protein. (410 aa)
	OsI_01687	Ubiquitin-like domain-containing protein. (155 aa)
	OsI_00350	Uncharacterized protein. (223 aa)
	OsI_20370	Uncharacterized protein. (210 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00350	OsI_01687	A2WKJ7	A2WPB5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_023634	A2WKJ7	A2YH41	Uncharacterized protein.	Serine/threonine-protein kinase ATR; Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism (By similarity); Belongs to the PI3/PI4-kinase family. ATM subfamily.	0.806
OsI_00350	OsI_19427	A2WKJ7	B8AWP0	Uncharacterized protein.	Uncharacterized protein.	0.512
OsI_00350	OsI_20205	A2WKJ7	B8AYV2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_24505	A2WKJ7	B8B2K1	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.806
OsI_00350	OsI_24939	A2WKJ7	B8B7C9	Uncharacterized protein.	Uncharacterized protein.	0.576
OsI_00350	OsI_28067	A2WKJ7	A2YRX0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_34140	A2WKJ7	B8BHM2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.482
OsI_00350	OsI_34337	A2WKJ7	B8BHW4	Uncharacterized protein.	HHH_2 domain-containing protein.	0.679
OsI_01687	OsI_00350	A2WPB5	A2WKJ7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.482
OsI_01687	OsI_02952	A2WPB5	A2WSW2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.482
OsI_01687	OsI_04360	A2WPB5	B8AC43	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.482
OsI_01687	OsI_05060	A2WPB5	B8A8S3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.482
OsI_01687	OsI_05697	A2WPB5	A2X0G0	Ubiquitin-like domain-containing protein.	NAC domain-containing protein.	0.482
OsI_01687	OsI_07319	A2WPB5	B8AIB4	Ubiquitin-like domain-containing protein.	Rep_fac-A_C domain-containing protein.	0.482
OsI_01687	OsI_09147	A2WPB5	A2XA72	Ubiquitin-like domain-containing protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.482
OsI_01687	OsI_09388	A2WPB5	B8AEI0	Ubiquitin-like domain-containing protein.	NAC domain-containing protein.	0.482
OsI_01687	OsI_09678	A2WPB5	A2XBL7	Ubiquitin-like domain-containing protein.	NAC domain-containing protein.	0.482
OsI_01687	OsI_10518	A2WPB5	A2XDX4	Ubiquitin-like domain-containing protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.482
OsI_01687	OsI_11010	A2WPB5	B8AL34	Ubiquitin-like domain-containing protein.	BHLH domain-containing protein.	0.660

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