STRINGSTRING
H2B.11 H2B.11 OsI_00350 OsI_00350 H2B.3 H2B.3 H2B.4 H2B.4 OsI_00433 OsI_00433 OsI_00434 OsI_00434 H2B.10 H2B.10 H2B.8 H2B.8 H2B.7 H2B.7 H2B.6 H2B.6 H2B.5 H2B.5 OsI_01354 OsI_01354 OsI_01687 OsI_01687 OsI_02095 OsI_02095 OsI_02952 OsI_02952 OsI_05697 OsI_05697 OsI_06228 OsI_06228 OsI_07371 OsI_07371 OsI_09094 OsI_09094 OsI_09147 OsI_09147 OsI_09678 OsI_09678 OsI_10518 OsI_10518 OsI_010709 OsI_010709 OsI_11070 OsI_11070 OsI_11135 OsI_11135 OsI_11178 OsI_11178 OsI_14707 OsI_14707 OsI_15007 OsI_15007 OsI_15683 OsI_15683 OsI_15689 OsI_15689 OsI_15691 OsI_15691 OsI_16639 OsI_16639 OsI_18743 OsI_18743 OsI_19590 OsI_19590 OsI_20371 OsI_20371 H2B.9 H2B.9 OsI_21098 OsI_21098 OsI_21263 OsI_21263 OsI_21564 OsI_21564 OsI_23741 OsI_23741 OsI_23994 OsI_23994 OsI_24169 OsI_24169 OsI_26966 OsI_26966 OsI_28030 OsI_28030 OsI_28067 OsI_28067 H2B.2 H2B.2 OsI_31953 OsI_31953 OsI_32207 OsI_32207 OsI_32447 OsI_32447 OsI_33558 OsI_33558 OsI_34126 OsI_34126 OsI_033149 OsI_033149 OsI_34668 OsI_34668 OsI_34943 OsI_34943 OsI_37160 OsI_37160 OsI_37314 OsI_37314 OsI_38262 OsI_38262 OsI_38263 OsI_38263 OsI_38775 OsI_38775 OsI_04575 OsI_04575 OsI_03294 OsI_03294 OsI_05060 OsI_05060 OsI_02335 OsI_02335 OsI_02336 OsI_02336 OsI_04360 OsI_04360 OsI_04483 OsI_04483 OsI_00441 OsI_00441 OsI_09206 OsI_09206 MCM5 MCM5 OsI_09388 OsI_09388 OsI_08332 OsI_08332 OsI_07319 OsI_07319 OsI_07377 OsI_07377 OsI_10676 OsI_10676 OsI_13614 OsI_13614 OsI_11204 OsI_11204 OsI_10291 OsI_10291 OsI_17890 OsI_17890 OsI_15690 OsI_15690 OsI_16372 OsI_16372 OsI_20936 OsI_20936 OsI_18166 OsI_18166 OsI_19594 OsI_19594 OsI_19620 OsI_19620 OsI_18245 OsI_18245 OsI_18471 OsI_18471 OsI_18564 OsI_18564 OsI_20205 OsI_20205 OsI_20231 OsI_20231 MCM8 MCM8 MCM3 MCM3 OsI_20370 OsI_20370 MCM6 MCM6 OsI_23219 OsI_23219 OsI_21955 OsI_21955 MCM9 MCM9 OsI_25713 OsI_25713 OsI_25732 OsI_25732 OsI_24654 OsI_24654 OsI_26407 OsI_26407 OsI_25208 OsI_25208 OsI_30000 OsI_30000 OsI_27885 OsI_27885 OsI_28022 OsI_28022 OsI_29518 OsI_29518 OsI_29519 OsI_29519 OsI_28202 OsI_28202 OsI_29697 OsI_29697 OsI_33491 OsI_33491 OsI_33492 OsI_33492 OsI_33899 OsI_33899 OsI_34031 OsI_34031 OsI_34122 OsI_34122 OsI_34140 OsI_34140 OsI_34301 OsI_34301 OsI_36121 OsI_36121 OsI_36876 OsI_36876 OsI_38467 OsI_38467 MCM7 MCM7 OsI_38782 OsI_38782 OsI_37935 OsI_37935 OsI_37949 OsI_37949
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H2B.11Histone H2B.11; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (139 aa)
OsI_00350Uncharacterized protein. (223 aa)
H2B.3Histone H2B.3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.4Histone H2B.4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
OsI_00433F-box domain-containing protein. (384 aa)
OsI_00434F-box domain-containing protein. (373 aa)
H2B.10Histone H2B.10; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.8Histone H2B.8; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.7Histone H2B.7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.6Histone H2B.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.5Histone H2B.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (155 aa)
OsI_01354UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (135 aa)
OsI_01687Ubiquitin-like domain-containing protein. (155 aa)
OsI_02095Histone domain-containing protein; Belongs to the histone H2B family. (102 aa)
OsI_02952Uncharacterized protein. (410 aa)
OsI_05697NAC domain-containing protein. (301 aa)
OsI_06228J domain-containing protein. (282 aa)
OsI_07371DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (152 aa)
OsI_09094Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (246 aa)
OsI_09147Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (658 aa)
OsI_09678NAC domain-containing protein. (295 aa)
OsI_10518Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
OsI_010709Histone H2B.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
OsI_11070Uncharacterized protein. (135 aa)
OsI_11135Importin N-terminal domain-containing protein. (870 aa)
OsI_11178Uncharacterized protein. (116 aa)
OsI_14707Uncharacterized protein. (455 aa)
OsI_15007CDT1 domain-containing protein. (585 aa)
OsI_15683GLTSCR1 domain-containing protein. (459 aa)
OsI_15689Uncharacterized protein. (693 aa)
OsI_15691GLTSCR1 domain-containing protein. (302 aa)
OsI_16639NAC domain-containing protein. (278 aa)
OsI_18743Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (272 aa)
OsI_19590Importin N-terminal domain-containing protein. (868 aa)
OsI_20371Uncharacterized protein. (261 aa)
H2B.9Histone H2B.9; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
OsI_21098Uncharacterized protein. (370 aa)
OsI_21263NAC domain-containing protein. (683 aa)
OsI_21564Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (246 aa)
OsI_23741Uncharacterized protein. (725 aa)
OsI_23994UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (296 aa)
OsI_24169Uncharacterized protein. (435 aa)
OsI_26966Origin of replication complex subunit 6; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (296 aa)
OsI_28030RNase H domain-containing protein. (351 aa)
OsI_28067Ubiquitin-like domain-containing protein. (253 aa)
H2B.2Histone H2B.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (150 aa)
OsI_31953Uncharacterized protein. (178 aa)
OsI_32207Zf-primase domain-containing protein. (414 aa)
OsI_32447CBFD_NFYB_HMF domain-containing protein. (167 aa)
OsI_33558NAC domain-containing protein. (543 aa)
OsI_34126CDT1 domain-containing protein. (570 aa)
OsI_033149UPF0496 protein 4. (456 aa)
OsI_34668Protein kinase domain-containing protein. (999 aa)
OsI_34943Uncharacterized protein. (331 aa)
OsI_37160Uncharacterized protein. (567 aa)
OsI_37314Uncharacterized protein. (331 aa)
OsI_38262GLTSCR1 domain-containing protein. (427 aa)
OsI_38263Uncharacterized protein. (135 aa)
OsI_38775Importin N-terminal domain-containing protein. (762 aa)
OsI_04575DNA polymerase. (1532 aa)
OsI_03294Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (388 aa)
OsI_05060Uncharacterized protein. (157 aa)
OsI_02335DNA helicase; Belongs to the MCM family. (725 aa)
OsI_02336MCM_lid domain-containing protein. (195 aa)
OsI_04360Uncharacterized protein. (397 aa)
OsI_04483Cell division control protein; Belongs to the CDC6/cdc18 family. (524 aa)
OsI_00441F-box domain-containing protein. (431 aa)
OsI_09206Uncharacterized protein. (706 aa)
MCM5DNA replication licensing factor MCM5; Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. (729 aa)
OsI_09388NAC domain-containing protein. (331 aa)
OsI_08332TPR_REGION domain-containing protein. (597 aa)
OsI_07319Rep_fac-A_C domain-containing protein. (431 aa)
OsI_07377DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2081 aa)
OsI_10676TPR_REGION domain-containing protein. (1316 aa)
OsI_13614Origin of replication complex subunit 5; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (524 aa)
OsI_11204RING-type domain-containing protein. (84 aa)
OsI_10291Origin of replication complex subunit 2; Essential protein (By similarity). Component of the origin recognition complex (ORC) that binds origins of replication. DNA- binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication (By similarity). (379 aa)
OsI_17890Uncharacterized protein. (321 aa)
OsI_15690GLTSCR1 domain-containing protein. (341 aa)
OsI_16372CULLIN_2 domain-containing protein; Belongs to the cullin family. (864 aa)
OsI_20936Uncharacterized protein. (526 aa)
OsI_18166Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (988 aa)
OsI_19594APC1_C domain-containing protein. (1799 aa)
OsI_19620DNA primase; Belongs to the eukaryotic-type primase small subunit family. (449 aa)
OsI_18245Uncharacterized protein. (381 aa)
OsI_18471Uncharacterized protein. (561 aa)
OsI_18564DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (533 aa)
OsI_20205Ubiquitin-like domain-containing protein. (83 aa)
OsI_20231Histone H2B; Belongs to the histone H2B family. (95 aa)
MCM8Probable DNA helicase MCM8; Probable DNA helicase that may play a role in DNA repair durin meiosis. (789 aa)
MCM3DNA replication licensing factor MCM3; Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. (770 aa)
OsI_20370Uncharacterized protein. (210 aa)
MCM6DNA replication licensing factor MCM6; Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. (830 aa)
OsI_23219Rep_fac-A_C domain-containing protein. (667 aa)
OsI_21955Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (1043 aa)
MCM9Probable DNA helicase MCM9; Probable DNA helicase that may play a role in DNA repair during meiosis. (674 aa)
OsI_25713DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (463 aa)
OsI_25732RING-type domain-containing protein. (84 aa)
OsI_24654Rep_fac-A_C domain-containing protein. (298 aa)
OsI_26407PI31_Prot_N domain-containing protein. (292 aa)
OsI_25208DUF223 domain-containing protein. (376 aa)
OsI_30000Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (219 aa)
OsI_27885NAC domain-containing protein. (738 aa)
OsI_28022Uncharacterized protein. (705 aa)
OsI_29518Uncharacterized protein. (131 aa)
OsI_29519DNA_pol_E_B domain-containing protein. (293 aa)
OsI_28202F-box domain-containing protein. (304 aa)
OsI_29697Histone H2B; Belongs to the histone H2B family. (56 aa)
OsI_33491ORC_WH_C domain-containing protein. (318 aa)
OsI_33492Uncharacterized protein. (335 aa)
OsI_33899RNase H domain-containing protein. (323 aa)
OsI_34031NAC domain-containing protein. (271 aa)
OsI_34122CDT1 domain-containing protein. (439 aa)
OsI_34140Ubiquitin-like domain-containing protein. (81 aa)
OsI_34301Uncharacterized protein. (461 aa)
OsI_36121DNA replication licensing factor MCM2; Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. (961 aa)
OsI_36876Uncharacterized protein. (184 aa)
OsI_38467Uncharacterized protein. (202 aa)
MCM7DNA replication licensing factor MCM7; Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. (725 aa)
OsI_38782Uncharacterized protein. (690 aa)
OsI_37935DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (625 aa)
OsI_37949Uncharacterized protein. (306 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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