STRINGSTRING
OsI_01687 OsI_01687 OsI_02095 OsI_02095 H2B.11 H2B.11 OsI_38878 OsI_38878 OsI_38596 OsI_38596 OsI_34140 OsI_34140 OsI_33961 OsI_33961 OsI_29697 OsI_29697 OsI_28202 OsI_28202 OsI_27878 OsI_27878 OsI_26824 OsI_26824 OsI_24626 OsI_24626 OsI_27351 OsI_27351 H2B.9 H2B.9 OsI_25970 OsI_25970 OsI_28067 OsI_28067 H2B.3 H2B.3 H2B.4 H2B.4 OsI_00433 OsI_00433 OsI_20231 OsI_20231 H2B.2 H2B.2 BRE1B BRE1B OsI_04916 OsI_04916 OsI_02277 OsI_02277 OsI_00441 OsI_00441 OsI_11097 OsI_11097 OsI_20205 OsI_20205 OsI_12902 OsI_12902 OsI_00434 OsI_00434 H2B.10 H2B.10 H2B.8 H2B.8 OsI_010709 OsI_010709 H2B.7 H2B.7 OsI_13595 OsI_13595 BRE1A BRE1A H2B.6 H2B.6 H2B.5 H2B.5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_01687Ubiquitin-like domain-containing protein. (155 aa)
OsI_02095Histone domain-containing protein; Belongs to the histone H2B family. (102 aa)
H2B.11Histone H2B.11; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (139 aa)
OsI_38878Uncharacterized protein. (664 aa)
OsI_38596Plus3 domain-containing protein. (780 aa)
OsI_34140Ubiquitin-like domain-containing protein. (81 aa)
OsI_33961Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (394 aa)
OsI_29697Histone H2B; Belongs to the histone H2B family. (56 aa)
OsI_28202F-box domain-containing protein. (304 aa)
OsI_27878Uncharacterized protein. (633 aa)
OsI_26824RING-type domain-containing protein. (389 aa)
OsI_24626Uncharacterized protein. (667 aa)
OsI_27351Uncharacterized protein. (1547 aa)
H2B.9Histone H2B.9; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
OsI_25970Uncharacterized protein. (1174 aa)
OsI_28067Ubiquitin-like domain-containing protein. (253 aa)
H2B.3Histone H2B.3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.4Histone H2B.4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
OsI_00433F-box domain-containing protein. (384 aa)
OsI_20231Histone H2B; Belongs to the histone H2B family. (95 aa)
H2B.2Histone H2B.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (150 aa)
BRE1BE3 ubiquitin-protein ligase BRE1-like 2; E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. (844 aa)
OsI_04916Uncharacterized protein. (521 aa)
OsI_02277Uncharacterized protein. (1026 aa)
OsI_00441F-box domain-containing protein. (431 aa)
OsI_11097Protein YIPF. (226 aa)
OsI_20205Ubiquitin-like domain-containing protein. (83 aa)
OsI_12902Uncharacterized protein. (375 aa)
OsI_00434F-box domain-containing protein. (373 aa)
H2B.10Histone H2B.10; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.8Histone H2B.8; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
OsI_010709Histone H2B.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
H2B.7Histone H2B.7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
OsI_13595Uncharacterized protein. (605 aa)
BRE1AE3 ubiquitin-protein ligase BRE1-like 1; E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. (884 aa)
H2B.6Histone H2B.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.5Histone H2B.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (155 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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