22 items (Oryza sativa Indica) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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gene fusions

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Others

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protein homology

Your Input:
	OsI_14295	Uncharacterized protein. (379 aa)
	OsI_08089	S1 motif domain-containing protein. (1030 aa)
	OsI_09429	EXOSC1 domain-containing protein. (192 aa)
	OsI_01203	S1-like domain-containing protein. (64 aa)
	OsI_02634	Uncharacterized protein. (408 aa)
	OsI_02640	Uncharacterized protein. (361 aa)
	OsI_03146	MPN domain-containing protein. (550 aa)
	PETs	Plastid-specific ribosomal protein-7, chloroplastic; [Elongation factor Ts, chloroplastic]: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity). (1123 aa)
	OsI_04736	Uncharacterized protein. (197 aa)
	OsI_25038	S1 motif domain-containing protein. (865 aa)
	OsI_27434	S1 motif domain-containing protein. (338 aa)
	OsI_20772	Uncharacterized protein. (536 aa)
	OsI_20456	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1627 aa)
	OsI_19893	Uncharacterized protein. (177 aa)
	OsI_04749	KH_dom_type_1 domain-containing protein. (239 aa)
	OsI_11307	Uncharacterized protein. (402 aa)
	OsI_11150	S1 motif domain-containing protein. (339 aa)
	OsI_06862	Uncharacterized protein. (1240 aa)
	OsI_04816	S1 motif domain-containing protein. (651 aa)
	infA	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (107 aa)
	OsI_25303	Uncharacterized protein. (1848 aa)
	OsI_16671	S1 domain-containing protein. (315 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_01203	OsI_03146	B8ABT2	B8A6W9	S1-like domain-containing protein.	MPN domain-containing protein.	0.691
OsI_01203	OsI_11150	B8ABT2	A2XFL2	S1-like domain-containing protein.	S1 motif domain-containing protein.	0.978
OsI_01203	OsI_27434	B8ABT2	A2YQ73	S1-like domain-containing protein.	S1 motif domain-containing protein.	0.978
OsI_01203	PETs	B8ABT2	A2ZLC1	S1-like domain-containing protein.	Plastid-specific ribosomal protein-7, chloroplastic; [Elongation factor Ts, chloroplastic]: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity).	0.439
OsI_01203	infA	B8ABT2	P0C379	S1-like domain-containing protein.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.877
OsI_02634	OsI_04736	B8AB73	A2WXT4	Uncharacterized protein.	Uncharacterized protein.	0.798
OsI_02634	OsI_04749	B8AB73	A2WXU6	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.798
OsI_02634	OsI_06862	B8AB73	A2X3S5	Uncharacterized protein.	Uncharacterized protein.	0.685
OsI_02634	OsI_08089	B8AB73	B8AFG8	Uncharacterized protein.	S1 motif domain-containing protein.	0.406
OsI_02634	OsI_09429	B8AB73	B8AET8	Uncharacterized protein.	EXOSC1 domain-containing protein.	0.879
OsI_02634	OsI_11307	B8AB73	A2XG06	Uncharacterized protein.	Uncharacterized protein.	0.919
OsI_02634	OsI_16671	B8AB73	B8AS29	Uncharacterized protein.	S1 domain-containing protein.	0.884
OsI_02634	OsI_25038	B8AB73	A2YIJ3	Uncharacterized protein.	S1 motif domain-containing protein.	0.406
OsI_02634	PETs	B8AB73	A2ZLC1	Uncharacterized protein.	Plastid-specific ribosomal protein-7, chloroplastic; [Elongation factor Ts, chloroplastic]: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity).	0.927
OsI_02634	infA	B8AB73	P0C379	Uncharacterized protein.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.782
OsI_02640	OsI_04736	B8AB36	A2WXT4	Uncharacterized protein.	Uncharacterized protein.	0.798
OsI_02640	OsI_04749	B8AB36	A2WXU6	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.798
OsI_02640	OsI_06862	B8AB36	A2X3S5	Uncharacterized protein.	Uncharacterized protein.	0.685
OsI_02640	OsI_08089	B8AB36	B8AFG8	Uncharacterized protein.	S1 motif domain-containing protein.	0.406
OsI_02640	OsI_09429	B8AB36	B8AET8	Uncharacterized protein.	EXOSC1 domain-containing protein.	0.879

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