(46 nodes) Glycosaminoglycan degradation network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_36297	Uncharacterized protein. (83 aa)
	OsI_35679	DUF1624 domain-containing protein. (444 aa)
	OsI_38150	SUEL-type lectin domain-containing protein. (314 aa)
	OsI_38151	Beta-galactosidase. (705 aa)
	OsI_04635	SUEL-type lectin domain-containing protein. (851 aa)
	OsI_04746	Uncharacterized protein. (392 aa)
	OsI_02561	Beta-galactosidase. (822 aa)
	OsI_02569	SUEL-type lectin domain-containing protein. (480 aa)
	OsI_00529	Uncharacterized protein. (330 aa)
	OsI_09564	Uncharacterized protein. (148 aa)
	OsI_07466	DUF1624 domain-containing protein. (454 aa)
	OsI_14254	Uncharacterized protein. (152 aa)
	OsI_14365	Uncharacterized protein. (484 aa)
	OsI_10152	SUEL-type lectin domain-containing protein. (851 aa)
	OsI_11626	Uncharacterized protein. (812 aa)
	OsI_10363	Uncharacterized protein. (278 aa)
	OsI_15768	DUF1624 domain-containing protein. (448 aa)
	OsI_17702	Uncharacterized protein. (829 aa)
	OsI_20800	Beta-galactosidase. (673 aa)
	OsI_26587	Beta-hexosaminidase. (593 aa)
	OsI_25394	Glyco_hydro_20 domain-containing protein. (400 aa)
	OsI_23450	Beta-galactosidase. (717 aa)
	OsI_23443	Uncharacterized protein. (85 aa)
	Hep6	Heparanase. (525 aa)
	OsI_20050	Glyco_hydro_35 domain-containing protein. (80 aa)
	OsI_19826	Glyco_hydro_20 domain-containing protein. (162 aa)
	OsI_12506	Usp domain-containing protein. (292 aa)
	OsI_10800	Beta-galactosidase. (861 aa)
	OsI_10495	Uncharacterized protein. (525 aa)
	OsI_10493	Remorin_C domain-containing protein. (323 aa)
	Hep2	Heparanase. (541 aa)
	OsI_07467	Uncharacterized protein. (94 aa)
	OsI_18203	Beta-hexosaminidase. (541 aa)
	OsI_006270	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family. (729 aa)
	OsI_00535	Uncharacterized protein. (120 aa)
	OsI_18526	DUF1624 domain-containing protein. (491 aa)
	OsI_19972	Beta-hexosaminidase. (527 aa)
	OsI_20049	Beta-galactosidase. (761 aa)
	OsI_30162	Beta-galactosidase. (1078 aa)
	OsI_29853	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (319 aa)
	OsI_30366	Uncharacterized protein. (170 aa)
	OsI_32205	SUEL-type lectin domain-containing protein. (807 aa)
	OsI_26741	Uncharacterized protein. (529 aa)
	OsI_38868	CaM_binding domain-containing protein. (1237 aa)
	OsI_36402	DUF1624 domain-containing protein. (450 aa)
	OsI_33138	Beta-galactosidase. (828 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Hep2	OsI_10495	A2XAN8	A2XDV3	Heparanase.	Uncharacterized protein.	0.827
Hep2	OsI_26741	A2XAN8	A2YND0	Heparanase.	Uncharacterized protein.	0.837
Hep2	OsI_38868	A2XAN8	B8BMP5	Heparanase.	CaM_binding domain-containing protein.	0.824
Hep6	OsI_10495	A2Y9Y7	A2XDV3	Heparanase.	Uncharacterized protein.	0.827
Hep6	OsI_26741	A2Y9Y7	A2YND0	Heparanase.	Uncharacterized protein.	0.837
Hep6	OsI_38868	A2Y9Y7	B8BMP5	Heparanase.	CaM_binding domain-containing protein.	0.824
OsI_006270	OsI_18203	A2X2H7	B8AXA8	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family.	Beta-hexosaminidase.	0.815
OsI_006270	OsI_19826	A2X2H7	A2Y4A1	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family.	Glyco_hydro_20 domain-containing protein.	0.584
OsI_006270	OsI_20800	A2X2H7	B8AW61	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family.	Beta-galactosidase.	0.833
OsI_006270	OsI_25394	A2X2H7	A2YJI5	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family.	Glyco_hydro_20 domain-containing protein.	0.584
OsI_006270	OsI_26587	A2X2H7	A2YMX9	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family.	Beta-hexosaminidase.	0.584
OsI_006270	OsI_30366	A2X2H7	B8BCX1	Beta-galactosidase 4; Belongs to the glycosyl hydrolase 35 family.	Uncharacterized protein.	0.584
OsI_02561	OsI_18203	B8AAQ6	B8AXA8	Beta-galactosidase.	Beta-hexosaminidase.	0.815
OsI_02561	OsI_19826	B8AAQ6	A2Y4A1	Beta-galactosidase.	Glyco_hydro_20 domain-containing protein.	0.584
OsI_02561	OsI_20800	B8AAQ6	B8AW61	Beta-galactosidase.	Beta-galactosidase.	0.833
OsI_02561	OsI_25394	B8AAQ6	A2YJI5	Beta-galactosidase.	Glyco_hydro_20 domain-containing protein.	0.584
OsI_02561	OsI_26587	B8AAQ6	A2YMX9	Beta-galactosidase.	Beta-hexosaminidase.	0.584
OsI_02561	OsI_30366	B8AAQ6	B8BCX1	Beta-galactosidase.	Uncharacterized protein.	0.584
OsI_02569	OsI_18203	B8AAR0	B8AXA8	SUEL-type lectin domain-containing protein.	Beta-hexosaminidase.	0.815
OsI_02569	OsI_19826	B8AAR0	A2Y4A1	SUEL-type lectin domain-containing protein.	Glyco_hydro_20 domain-containing protein.	0.584

page 1 of 9

Server load: medium (72%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About