(46 nodes) Butanoate metabolism network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_08011	Uncharacterized protein. (554 aa)
	OsI_07685	Uncharacterized protein. (293 aa)
	OsI_00091	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
	OsI_01328	Pyruvate carboxyltransferase domain-containing protein. (459 aa)
	OsI_04151	DAO domain-containing protein. (416 aa)
	OsI_02524	Uncharacterized protein. (341 aa)
	OsI_02453	Uncharacterized protein. (1601 aa)
	OsI_01787	Uncharacterized protein. (606 aa)
	OsI_37387	Pyruvate carboxyltransferase domain-containing protein. (387 aa)
	OsI_36872	Elf4 domain-containing protein. (117 aa)
	OsI_35017	Pyruvate carboxyltransferase domain-containing protein. (387 aa)
	OsI_32080	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (476 aa)
	OsI_30555	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	OsI_30125	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (419 aa)
	OsI_29517	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (514 aa)
	OsI_29002	Elf4 domain-containing protein. (151 aa)
	OsI_16070	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (484 aa)
	OsI_15666	Acetolactate synthase. (663 aa)
	OsI_15664	Acetolactate synthase. (662 aa)
	OsI_12004	Elf4 domain-containing protein. (114 aa)
	OsI_11271	Uncharacterized protein. (268 aa)
	OsI_11223	Uncharacterized protein. (89 aa)
	OsI_10669	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (492 aa)
	OsI_09875	Uncharacterized protein. (548 aa)
	OsI_09611	Uncharacterized protein. (73 aa)
	OsI_06671	TPP_enzyme_C domain-containing protein. (85 aa)
	OsI_05608	Uncharacterized protein. (571 aa)
	OsI_05556	Uncharacterized protein. (162 aa)
	OsI_04880	TF-B3 domain-containing protein. (727 aa)
	OsI_04066	Uncharacterized protein. (302 aa)
	OsI_28220	Probable gamma-aminobutyrate transaminase 3, mitochondrial; Transaminase that degrades gamma-amino butyric acid (GABA). Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (510 aa)
	OsI_35716	Uncharacterized protein. (476 aa)
	OsI_17385	Gamma-aminobutyrate transaminase 1, mitochondrial; Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate as amino-group acceptor, but not 2-oxoglutarate. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (516 aa)
	OsI_17384	Probable gamma-aminobutyrate transaminase 2, mitochondrial; Transaminase that degrades gamma-amino butyric acid (GABA). Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (497 aa)
	OsI_06045	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (527 aa)
	OsI_09754	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (532 aa)
	OsI_09874	Uncharacterized protein. (550 aa)
	OsI_09876	Uncharacterized protein. (82 aa)
	OsI_11221	Uncharacterized protein. (567 aa)
	OsI_11224	Uncharacterized protein. (585 aa)
	OsI_13312	Uncharacterized protein. (313 aa)
	OsI_13319	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (480 aa)
	OsI_17900	Uncharacterized protein. (502 aa)
	OsI_16068	Uncharacterized protein. (235 aa)
	OsI_16074	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (500 aa)
	OsI_24537	TPP_enzyme_M domain-containing protein. (71 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00091	OsI_01328	B8ACV4	B8AC86	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Pyruvate carboxyltransferase domain-containing protein.	0.973
OsI_00091	OsI_01787	B8ACV4	B8A7I3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.575
OsI_00091	OsI_02453	B8ACV4	B8AAA5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.944
OsI_00091	OsI_04066	B8ACV4	A2WVZ2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.998
OsI_00091	OsI_05608	B8ACV4	A2X068	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.575
OsI_00091	OsI_06045	B8ACV4	B8AIJ7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.713
OsI_00091	OsI_09611	B8ACV4	A2XBG0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.575
OsI_00091	OsI_09754	B8ACV4	B8ALW2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.998
OsI_00091	OsI_09874	B8ACV4	B8AME7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.575
OsI_00091	OsI_09875	B8ACV4	A2XC55	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.575
OsI_00091	OsI_09876	B8ACV4	B8AME8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.575
OsI_00091	OsI_11221	B8ACV4	B8AMG1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.962
OsI_00091	OsI_11223	B8ACV4	A2XFS8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.940
OsI_00091	OsI_11224	B8ACV4	B8AMG2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.940
OsI_00091	OsI_11271	B8ACV4	A2XFX2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.940
OsI_00091	OsI_12004	B8ACV4	A2XHW1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Elf4 domain-containing protein.	0.987
OsI_00091	OsI_17900	B8ACV4	B8ARF5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.572
OsI_00091	OsI_29002	B8ACV4	A2YUJ6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Elf4 domain-containing protein.	0.987
OsI_00091	OsI_30125	B8ACV4	A2YXQ2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.997
OsI_00091	OsI_30555	B8ACV4	A2YYZ3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.943

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