(10 nodes) C5-Branched dibasic acid metabolism network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_15664	Acetolactate synthase. (662 aa)
	OsI_12854	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (394 aa)
	OsI_08324	Aconitase_C domain-containing protein. (210 aa)
	OsI_06671	TPP_enzyme_C domain-containing protein. (85 aa)
	OsI_04880	TF-B3 domain-containing protein. (727 aa)
	OsI_08011	Uncharacterized protein. (554 aa)
	OsI_24537	TPP_enzyme_M domain-containing protein. (71 aa)
	OsI_35716	Uncharacterized protein. (476 aa)
	OsI_05669	Aconitase domain-containing protein. (514 aa)
	OsI_15666	Acetolactate synthase. (663 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_05669	OsI_06671	B8AGY8	A2X390	Aconitase domain-containing protein.	TPP_enzyme_C domain-containing protein.	0.733
OsI_05669	OsI_08011	B8AGY8	B8AFH3	Aconitase domain-containing protein.	Uncharacterized protein.	0.867
OsI_05669	OsI_08324	B8AGY8	A2X7X9	Aconitase domain-containing protein.	Aconitase_C domain-containing protein.	0.983
OsI_05669	OsI_12854	B8AGY8	A2XK82	Aconitase domain-containing protein.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.995
OsI_05669	OsI_15664	B8AGY8	A2XSS8	Aconitase domain-containing protein.	Acetolactate synthase.	0.782
OsI_05669	OsI_15666	B8AGY8	A2XST3	Aconitase domain-containing protein.	Acetolactate synthase.	0.782
OsI_05669	OsI_24537	B8AGY8	B8B2W9	Aconitase domain-containing protein.	TPP_enzyme_M domain-containing protein.	0.733
OsI_05669	OsI_35716	B8AGY8	B8BJX9	Aconitase domain-containing protein.	Uncharacterized protein.	0.867
OsI_06671	OsI_05669	A2X390	B8AGY8	TPP_enzyme_C domain-containing protein.	Aconitase domain-containing protein.	0.733
OsI_06671	OsI_08011	A2X390	B8AFH3	TPP_enzyme_C domain-containing protein.	Uncharacterized protein.	0.997
OsI_06671	OsI_08324	A2X390	A2X7X9	TPP_enzyme_C domain-containing protein.	Aconitase_C domain-containing protein.	0.790
OsI_06671	OsI_12854	A2X390	A2XK82	TPP_enzyme_C domain-containing protein.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.945
OsI_06671	OsI_35716	A2X390	B8BJX9	TPP_enzyme_C domain-containing protein.	Uncharacterized protein.	0.997
OsI_08011	OsI_05669	B8AFH3	B8AGY8	Uncharacterized protein.	Aconitase domain-containing protein.	0.867
OsI_08011	OsI_06671	B8AFH3	A2X390	Uncharacterized protein.	TPP_enzyme_C domain-containing protein.	0.997
OsI_08011	OsI_08324	B8AFH3	A2X7X9	Uncharacterized protein.	Aconitase_C domain-containing protein.	0.891
OsI_08011	OsI_12854	B8AFH3	A2XK82	Uncharacterized protein.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.994
OsI_08011	OsI_15664	B8AFH3	A2XSS8	Uncharacterized protein.	Acetolactate synthase.	0.998
OsI_08011	OsI_15666	B8AFH3	A2XST3	Uncharacterized protein.	Acetolactate synthase.	0.998
OsI_08011	OsI_24537	B8AFH3	B8B2W9	Uncharacterized protein.	TPP_enzyme_M domain-containing protein.	0.997

page 1 of 3

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About