STRINGSTRING
A0A0N7KFQ6 A0A0N7KFQ6 A0A0N7KQ46 A0A0N7KQ46 A0A0N7KQA7 A0A0N7KQA7 A0A0N7KQF0 A0A0N7KQF0 A0A0P0V1B4 A0A0P0V1B4 A0A0P0V3J7 A0A0P0V3J7 A0A0P0VDD6 A0A0P0VDD6 A0A0P0VDW4 A0A0P0VDW4 A0A0P0VDW6 A0A0P0VDW6 A0A0P0VEK6 A0A0P0VEK6 A0A0P0VEN2 A0A0P0VEN2 A0A0P0VEP5 A0A0P0VEP5 A0A0P0VFG2 A0A0P0VFG2 A0A0P0VIZ4 A0A0P0VIZ4 A0A0P0VJK6 A0A0P0VJK6 A0A0P0VP35 A0A0P0VP35 A0A0P0VPC8 A0A0P0VPC8 A0A0P0W2I1 A0A0P0W2I1 A0A0P0W9C3 A0A0P0W9C3 A0A0P0W9E9 A0A0P0W9E9 A0A0P0WB93 A0A0P0WB93 A0A0P0WIH1 A0A0P0WIH1 A0A0P0WLI2 A0A0P0WLI2 A0A0P0WSW9 A0A0P0WSW9 A0A0P0WTW6 A0A0P0WTW6 A0A0P0WWK8 A0A0P0WWK8 A0A0P0WX64 A0A0P0WX64 A0A0P0X0F2 A0A0P0X0F2 A0A0P0X3N8 A0A0P0X3N8 A0A0P0XAL4 A0A0P0XAL4 A0A0P0XB85 A0A0P0XB85 A0A0P0XCD9 A0A0P0XCD9 A0A0P0XCL4 A0A0P0XCL4 A0A0P0XE29 A0A0P0XE29 A0A0P0XFY6 A0A0P0XFY6 A0A0P0XVH2 A0A0P0XVH2 A0A0P0XXX9 A0A0P0XXX9 A0A0P0XYN0 A0A0P0XYN0 A0A0P0Y2H6 A0A0P0Y2H6 A0A0P0Y2V6 A0A0P0Y2V6 A0A0P0Y727 A0A0P0Y727 MER3 MER3 B7EDS1_ORYSJ B7EDS1_ORYSJ C7JA34_ORYSJ C7JA34_ORYSJ Q0D7W8_ORYSJ Q0D7W8_ORYSJ Q0D7W9_ORYSJ Q0D7W9_ORYSJ Q0DI02_ORYSJ Q0DI02_ORYSJ OsJ_17170 OsJ_17170 Q0DU12_ORYSJ Q0DU12_ORYSJ Q0E1C9_ORYSJ Q0E1C9_ORYSJ Q0E3Z8_ORYSJ Q0E3Z8_ORYSJ Q0IWN2_ORYSJ Q0IWN2_ORYSJ RH45_ORYSJ RH45_ORYSJ Q0J803_ORYSJ Q0J803_ORYSJ Q0JH94_ORYSJ Q0JH94_ORYSJ Q10AI1_ORYSJ Q10AI1_ORYSJ Q10B15_ORYSJ Q10B15_ORYSJ Q10DW3_ORYSJ Q10DW3_ORYSJ Q10LA2_ORYSJ Q10LA2_ORYSJ Q10LQ8_ORYSJ Q10LQ8_ORYSJ Q10M15_ORYSJ Q10M15_ORYSJ RH24_ORYSJ RH24_ORYSJ SSD1 SSD1 OsJ_10509 OsJ_10509 Q10NF9_ORYSJ Q10NF9_ORYSJ Q10NP6_ORYSJ Q10NP6_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q10PX4_ORYSJ Q10PX4_ORYSJ Q10Q04_ORYSJ Q10Q04_ORYSJ Q10Q44_ORYSJ Q10Q44_ORYSJ Q2QXQ5_ORYSJ Q2QXQ5_ORYSJ Q2R066_ORYSJ Q2R066_ORYSJ Q2RAL9_ORYSJ Q2RAL9_ORYSJ Q337J6_ORYSJ Q337J6_ORYSJ Q33BE1_ORYSJ Q33BE1_ORYSJ Q53KX3_ORYSJ Q53KX3_ORYSJ Q53MQ0_ORYSJ Q53MQ0_ORYSJ OsJ_12293 OsJ_12293 Q5N817_ORYSJ Q5N817_ORYSJ LSM3 LSM3 Q5QNL8_ORYSJ Q5QNL8_ORYSJ LSM8 LSM8 Q5WMV0_ORYSJ Q5WMV0_ORYSJ LSM5 LSM5 Q64MA5_ORYSJ Q64MA5_ORYSJ Q67WC9_ORYSJ Q67WC9_ORYSJ Q69IN4_ORYSJ Q69IN4_ORYSJ Q69K06_ORYSJ Q69K06_ORYSJ Q69MX3_ORYSJ Q69MX3_ORYSJ Q69V60_ORYSJ Q69V60_ORYSJ Q69Y13_ORYSJ Q69Y13_ORYSJ Q6ESY0_ORYSJ Q6ESY0_ORYSJ Q6ET26_ORYSJ Q6ET26_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q6EUD5_ORYSJ Q6EUD5_ORYSJ Q6EUK2_ORYSJ Q6EUK2_ORYSJ P0505H05.40 P0505H05.40 Q6K2E9_ORYSJ Q6K2E9_ORYSJ Q6K7Q7_ORYSJ Q6K7Q7_ORYSJ Q6K8R4_ORYSJ Q6K8R4_ORYSJ Q6K975_ORYSJ Q6K975_ORYSJ Q6KAB7_ORYSJ Q6KAB7_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6Z8Q6_ORYSJ Q6Z8Q6_ORYSJ Q75K32_ORYSJ Q75K32_ORYSJ Q75LD6_ORYSJ Q75LD6_ORYSJ Q7EYN1_ORYSJ Q7EYN1_ORYSJ DIM1 DIM1 Q7XDP6_ORYSJ Q7XDP6_ORYSJ Q7XM15_ORYSJ Q7XM15_ORYSJ Q7XQI1_ORYSJ Q7XQI1_ORYSJ Q7XU07_ORYSJ Q7XU07_ORYSJ Q7XZG6_ORYSJ Q7XZG6_ORYSJ Q7XZG9_ORYSJ Q7XZG9_ORYSJ Q84MP1_ORYSJ Q84MP1_ORYSJ OsJ_26125 OsJ_26125 Q84YS0_ORYSJ Q84YS0_ORYSJ Q851A1_ORYSJ Q851A1_ORYSJ Q851A3_ORYSJ Q851A3_ORYSJ Q8H4L0_ORYSJ Q8H4L0_ORYSJ Q8L460_ORYSJ Q8L460_ORYSJ Q9AWQ3_ORYSJ Q9AWQ3_ORYSJ OsJ_01157 OsJ_01157 Q9LWY5_ORYSJ Q9LWY5_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0N7KFQ6Os02g0628800 protein. (109 aa)
A0A0N7KQ46Os08g0511500 protein. (101 aa)
A0A0N7KQA7Os08g0559700 protein. (170 aa)
A0A0N7KQF0Os09g0249600 protein. (480 aa)
A0A0P0V1B4Os01g0263600 protein. (737 aa)
A0A0P0V3J7Os01g0532200 protein. (467 aa)
A0A0P0VDD6Small nuclear ribonucleoprotein Sm D2. (103 aa)
A0A0P0VDW4Os02g0108700 protein. (105 aa)
A0A0P0VDW6Os02g0106966 protein. (276 aa)
A0A0P0VEK6Os02g0142300 protein. (128 aa)
A0A0P0VEN2Os02g0137400 protein. (858 aa)
A0A0P0VEP5Os02g0147300 protein. (185 aa)
A0A0P0VFG2Os02g0179900 protein. (240 aa)
A0A0P0VIZ4Os02g0478900 protein. (927 aa)
A0A0P0VJK6Os02g0511500 protein. (348 aa)
A0A0P0VP35Os02g0730200 protein. (146 aa)
A0A0P0VPC8Os02g0730100 protein. (147 aa)
A0A0P0W2I1Os03g0710100 protein. (794 aa)
A0A0P0W9C3Os04g0348300 protein. (972 aa)
A0A0P0W9E9Os04g0385700 protein. (359 aa)
A0A0P0WB93Os04g0470150 protein. (76 aa)
A0A0P0WIH1Os05g0163250 protein. (559 aa)
A0A0P0WLI2Os05g0370300 protein. (434 aa)
A0A0P0WSW9Os06g0167000 protein. (1130 aa)
A0A0P0WTW6Os06g0214550 protein. (222 aa)
A0A0P0WWK8Os06g0335101 protein. (114 aa)
A0A0P0WX64Os06g0515200 protein. (134 aa)
A0A0P0X0F2Os06g0682700 protein. (644 aa)
A0A0P0X3N8Os07g0192900 protein. (296 aa)
A0A0P0XAL4Os08g0100700 protein. (154 aa)
A0A0P0XB85Os08g0109900 protein. (251 aa)
A0A0P0XCD9Os08g0154225 protein; Belongs to the DEAD box helicase family. (595 aa)
A0A0P0XCL4Os08g0177700 protein. (108 aa)
A0A0P0XE29Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
A0A0P0XFY6Os08g0416400 protein. (391 aa)
A0A0P0XVH2Os10g0483700 protein. (152 aa)
A0A0P0XXX9Os11g0110800 protein. (153 aa)
A0A0P0XYN0Os11g0145400 protein. (83 aa)
A0A0P0Y2H6Os11g0457000 protein. (309 aa)
A0A0P0Y2V6Os11g0495400 protein. (131 aa)
A0A0P0Y727Os12g0143100 protein. (91 aa)
MER3ATP-dependent DNA helicase MER3 homolog; DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference- sensitive crossovers (class I meiotic crossover). Works cooperatively with ZIP4 to promote crossovers ; Belongs to the helicase family. SKI2 subfamily. (1205 aa)
B7EDS1_ORYSJcDNA clone:J013113P22, full insert sequence. (124 aa)
C7JA34_ORYSJOs12g0635400 protein. (111 aa)
Q0D7W8_ORYSJOs07g0203800 protein. (281 aa)
Q0D7W9_ORYSJOs07g0203700 protein. (666 aa)
Q0DI02_ORYSJcDNA clone:001-038-E05, full insert sequence. (187 aa)
OsJ_17170U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing. (253 aa)
Q0DU12_ORYSJOs03g0213400 protein. (1139 aa)
Q0E1C9_ORYSJcDNA clone:001-113-D01, full insert sequence. (199 aa)
Q0E3Z8_ORYSJOs02g0146400 protein. (358 aa)
Q0IWN2_ORYSJOs10g0498600 protein. (428 aa)
RH45_ORYSJDEAD-box ATP-dependent RNA helicase 45; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (947 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0JH94_ORYSJOs01g0876500 protein. (100 aa)
Q10AI1_ORYSJTransducin family protein, putative, expressed. (380 aa)
Q10B15_ORYSJcDNA clone:002-149-C11, full insert sequence. (574 aa)
Q10DW3_ORYSJSplicing factor 3A subunit 3, putative, expressed. (507 aa)
Q10LA2_ORYSJU4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed. (524 aa)
Q10LQ8_ORYSJPP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed. (472 aa)
Q10M15_ORYSJRNA recognition motif family protein, expressed. (467 aa)
RH24_ORYSJDEAD-box ATP-dependent RNA helicase 24; Belongs to the DEAD box helicase family. (770 aa)
SSD1cDNA clone:J023014L15, full insert sequence. (944 aa)
OsJ_10509U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing. (232 aa)
Q10NF9_ORYSJRetrotransposon protein, putative, unclassified, expressed. (840 aa)
Q10NP6_ORYSJSplicing factor 3A subunit 2, putative, expressed. (321 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q10PX4_ORYSJcDNA clone:002-184-F06, full insert sequence. (161 aa)
Q10Q04_ORYSJOs03g0214900 protein. (979 aa)
Q10Q44_ORYSJPre-mRNA processing protein prp39, putative, expressed. (789 aa)
Q2QXQ5_ORYSJATP-dependent RNA helicase, putative, expressed. (528 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
Q2RAL9_ORYSJcDNA clone:J023086C01, full insert sequence. (567 aa)
Q337J6_ORYSJFF domain containing protein, expressed. (1078 aa)
Q33BE1_ORYSJTransposon protein, putative, CACTA, En/Spm sub-class, expressed. (463 aa)
Q53KX3_ORYSJElongation factor Tu family protein, putative, expressed. (1029 aa)
Q53MQ0_ORYSJThioredoxin-like protein 4B, putative, expressed. (152 aa)
OsJ_12293DEAD-box ATP-dependent RNA helicase 21; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity); Belongs to the DEAD box helicase family. DDX23/PRP28 subfamily. (736 aa)
Q5N817_ORYSJcDNA clone:J033118P14, full insert sequence. (524 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
Q5QNL8_ORYSJcDNA clone:J033109B05, full insert sequence. (381 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
Q64MA5_ORYSJOs09g0521700 protein. (225 aa)
Q67WC9_ORYSJcDNA clone:006-305-A11, full insert sequence. (343 aa)
Q69IN4_ORYSJcDNA clone:J013129L11, full insert sequence. (375 aa)
Q69K06_ORYSJOs09g0103600 protein. (392 aa)
Q69MX3_ORYSJcDNA clone:J023074K10, full insert sequence. (554 aa)
Q69V60_ORYSJcDNA clone:J033113H11, full insert sequence. (997 aa)
Q69Y13_ORYSJcDNA clone:J013038O15, full insert sequence. (243 aa)
Q6ESY0_ORYSJOs02g0543300 protein. (1005 aa)
Q6ET26_ORYSJOs02g0280100 protein. (435 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q6EUD5_ORYSJOs02g0245000 protein. (792 aa)
Q6EUK2_ORYSJcDNA clone:J023062O22, full insert sequence. (284 aa)
P0505H05.40DEAD-box ATP-dependent RNA helicase 22. (577 aa)
Q6K2E9_ORYSJcDNA clone:001-016-D10, full insert sequence. (101 aa)
Q6K7Q7_ORYSJOs02g0827300 protein. (582 aa)
Q6K8R4_ORYSJcDNA clone:J013052G16, full insert sequence. (418 aa)
Q6K975_ORYSJOs02g0831300 protein. (516 aa)
Q6KAB7_ORYSJOs02g0294000 protein. (362 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6Z8Q6_ORYSJSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q75LD6_ORYSJRNA-binding protein Luc7-like 2, putative, expressed. (329 aa)
Q7EYN1_ORYSJOs08g0379000 protein. (1161 aa)
DIM1Thioredoxin-like protein 4A, putative, expressed. (142 aa)
Q7XDP6_ORYSJSplicing factor 3B subunit 4, putative, expressed. (355 aa)
Q7XM15_ORYSJcDNA, clone: J075162F09, full insert sequence. (110 aa)
Q7XQI1_ORYSJOs04g0496400 protein. (476 aa)
Q7XU07_ORYSJcDNA clone:J013052N06, full insert sequence. (484 aa)
Q7XZG6_ORYSJPre-mRNA branch site p14, putative, expressed. (130 aa)
Q7XZG9_ORYSJPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (204 aa)
Q84MP1_ORYSJU5 small nuclear ribonucleoprotein 200 kDa helicase, putative. (2144 aa)
OsJ_26125DEAD-box ATP-dependent RNA helicase 42; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (1049 aa)
Q84YS0_ORYSJcDNA clone:001-116-B04, full insert sequence. (348 aa)
Q851A1_ORYSJcDNA clone:J013052G24, full insert sequence. (886 aa)
Q851A3_ORYSJcDNA clone:006-207-E08, full insert sequence. (202 aa)
Q8H4L0_ORYSJOs07g0141600 protein. (484 aa)
Q8L460_ORYSJcDNA, clone: J100058K04, full insert sequence. (368 aa)
Q9AWQ3_ORYSJcDNA clone:J023132M16, full insert sequence. (517 aa)
OsJ_01157Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
Q9LWY5_ORYSJOs06g0106100 protein. (230 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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