STRINGSTRING
A0A0N7KQ46 A0A0N7KQ46 A0A0N7KQF0 A0A0N7KQF0 A0A0P0V1B4 A0A0P0V1B4 A0A0P0VDD6 A0A0P0VDD6 A0A0P0VDW4 A0A0P0VDW4 A0A0P0VEN2 A0A0P0VEN2 A0A0P0VEP5 A0A0P0VEP5 A0A0P0VIZ4 A0A0P0VIZ4 A0A0P0VJK6 A0A0P0VJK6 A0A0P0VP35 A0A0P0VP35 A0A0P0VPC8 A0A0P0VPC8 A0A0P0WB93 A0A0P0WB93 A0A0P0WIH1 A0A0P0WIH1 A0A0P0WSW9 A0A0P0WSW9 A0A0P0WTW6 A0A0P0WTW6 A0A0P0X0F2 A0A0P0X0F2 A0A0P0XCL4 A0A0P0XCL4 A0A0P0XE29 A0A0P0XE29 A0A0P0Y2V6 A0A0P0Y2V6 Q0D7W8_ORYSJ Q0D7W8_ORYSJ Q0D7W9_ORYSJ Q0D7W9_ORYSJ Q0DI02_ORYSJ Q0DI02_ORYSJ OsJ_17170 OsJ_17170 Q0IWN2_ORYSJ Q0IWN2_ORYSJ RH45_ORYSJ RH45_ORYSJ Q0J803_ORYSJ Q0J803_ORYSJ Q0JH94_ORYSJ Q0JH94_ORYSJ Q10AI1_ORYSJ Q10AI1_ORYSJ Q10DW3_ORYSJ Q10DW3_ORYSJ Q10LA2_ORYSJ Q10LA2_ORYSJ Q10M15_ORYSJ Q10M15_ORYSJ OsJ_10509 OsJ_10509 Q10NP6_ORYSJ Q10NP6_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q2R066_ORYSJ Q2R066_ORYSJ Q33BE1_ORYSJ Q33BE1_ORYSJ Q53MQ0_ORYSJ Q53MQ0_ORYSJ OsJ_12293 OsJ_12293 LSM3 LSM3 Q5QNL8_ORYSJ Q5QNL8_ORYSJ LSM8 LSM8 Q5WMV0_ORYSJ Q5WMV0_ORYSJ LSM5 LSM5 Q69IN4_ORYSJ Q69IN4_ORYSJ Q69V60_ORYSJ Q69V60_ORYSJ Q69Y13_ORYSJ Q69Y13_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q6EUD5_ORYSJ Q6EUD5_ORYSJ Q6EUK2_ORYSJ Q6EUK2_ORYSJ P0505H05.40 P0505H05.40 Q6K2E9_ORYSJ Q6K2E9_ORYSJ Q6K7Q7_ORYSJ Q6K7Q7_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6Z8Q6_ORYSJ Q6Z8Q6_ORYSJ Q75K32_ORYSJ Q75K32_ORYSJ DIM1 DIM1 Q7XDP6_ORYSJ Q7XDP6_ORYSJ Q7XM15_ORYSJ Q7XM15_ORYSJ Q7XU07_ORYSJ Q7XU07_ORYSJ Q7XZG6_ORYSJ Q7XZG6_ORYSJ Q7XZG9_ORYSJ Q7XZG9_ORYSJ Q84MP1_ORYSJ Q84MP1_ORYSJ Q851A3_ORYSJ Q851A3_ORYSJ Q8H4L0_ORYSJ Q8H4L0_ORYSJ OsJ_01157 OsJ_01157
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0N7KQ46Os08g0511500 protein. (101 aa)
A0A0N7KQF0Os09g0249600 protein. (480 aa)
A0A0P0V1B4Os01g0263600 protein. (737 aa)
A0A0P0VDD6Small nuclear ribonucleoprotein Sm D2. (103 aa)
A0A0P0VDW4Os02g0108700 protein. (105 aa)
A0A0P0VEN2Os02g0137400 protein. (858 aa)
A0A0P0VEP5Os02g0147300 protein. (185 aa)
A0A0P0VIZ4Os02g0478900 protein. (927 aa)
A0A0P0VJK6Os02g0511500 protein. (348 aa)
A0A0P0VP35Os02g0730200 protein. (146 aa)
A0A0P0VPC8Os02g0730100 protein. (147 aa)
A0A0P0WB93Os04g0470150 protein. (76 aa)
A0A0P0WIH1Os05g0163250 protein. (559 aa)
A0A0P0WSW9Os06g0167000 protein. (1130 aa)
A0A0P0WTW6Os06g0214550 protein. (222 aa)
A0A0P0X0F2Os06g0682700 protein. (644 aa)
A0A0P0XCL4Os08g0177700 protein. (108 aa)
A0A0P0XE29Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
A0A0P0Y2V6Os11g0495400 protein. (131 aa)
Q0D7W8_ORYSJOs07g0203800 protein. (281 aa)
Q0D7W9_ORYSJOs07g0203700 protein. (666 aa)
Q0DI02_ORYSJcDNA clone:001-038-E05, full insert sequence. (187 aa)
OsJ_17170U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing. (253 aa)
Q0IWN2_ORYSJOs10g0498600 protein. (428 aa)
RH45_ORYSJDEAD-box ATP-dependent RNA helicase 45; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (947 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0JH94_ORYSJOs01g0876500 protein. (100 aa)
Q10AI1_ORYSJTransducin family protein, putative, expressed. (380 aa)
Q10DW3_ORYSJSplicing factor 3A subunit 3, putative, expressed. (507 aa)
Q10LA2_ORYSJU4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed. (524 aa)
Q10M15_ORYSJRNA recognition motif family protein, expressed. (467 aa)
OsJ_10509U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing. (232 aa)
Q10NP6_ORYSJSplicing factor 3A subunit 2, putative, expressed. (321 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
Q33BE1_ORYSJTransposon protein, putative, CACTA, En/Spm sub-class, expressed. (463 aa)
Q53MQ0_ORYSJThioredoxin-like protein 4B, putative, expressed. (152 aa)
OsJ_12293DEAD-box ATP-dependent RNA helicase 21; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity); Belongs to the DEAD box helicase family. DDX23/PRP28 subfamily. (736 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
Q5QNL8_ORYSJcDNA clone:J033109B05, full insert sequence. (381 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
Q69IN4_ORYSJcDNA clone:J013129L11, full insert sequence. (375 aa)
Q69V60_ORYSJcDNA clone:J033113H11, full insert sequence. (997 aa)
Q69Y13_ORYSJcDNA clone:J013038O15, full insert sequence. (243 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q6EUD5_ORYSJOs02g0245000 protein. (792 aa)
Q6EUK2_ORYSJcDNA clone:J023062O22, full insert sequence. (284 aa)
P0505H05.40DEAD-box ATP-dependent RNA helicase 22. (577 aa)
Q6K2E9_ORYSJcDNA clone:001-016-D10, full insert sequence. (101 aa)
Q6K7Q7_ORYSJOs02g0827300 protein. (582 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6Z8Q6_ORYSJSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
DIM1Thioredoxin-like protein 4A, putative, expressed. (142 aa)
Q7XDP6_ORYSJSplicing factor 3B subunit 4, putative, expressed. (355 aa)
Q7XM15_ORYSJcDNA, clone: J075162F09, full insert sequence. (110 aa)
Q7XU07_ORYSJcDNA clone:J013052N06, full insert sequence. (484 aa)
Q7XZG6_ORYSJPre-mRNA branch site p14, putative, expressed. (130 aa)
Q7XZG9_ORYSJPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (204 aa)
Q84MP1_ORYSJU5 small nuclear ribonucleoprotein 200 kDa helicase, putative. (2144 aa)
Q851A3_ORYSJcDNA clone:006-207-E08, full insert sequence. (202 aa)
Q8H4L0_ORYSJOs07g0141600 protein. (484 aa)
OsJ_01157Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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