STRINGSTRING
A0A0P0VEN2 A0A0P0VEN2 A0A0P0VEP5 A0A0P0VEP5 A0A0P0VIZ4 A0A0P0VIZ4 A0A0P0X0F2 A0A0P0X0F2 A0A0P0XE29 A0A0P0XE29 A0A0P0Y2V6 A0A0P0Y2V6 Q0D7W8_ORYSJ Q0D7W8_ORYSJ Q0D7W9_ORYSJ Q0D7W9_ORYSJ OsJ_17170 OsJ_17170 Q0J803_ORYSJ Q0J803_ORYSJ Q0JH94_ORYSJ Q0JH94_ORYSJ OsJ_10509 OsJ_10509 Q33BE1_ORYSJ Q33BE1_ORYSJ Q5WMV0_ORYSJ Q5WMV0_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q6K7Q7_ORYSJ Q6K7Q7_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6Z8Q6_ORYSJ Q6Z8Q6_ORYSJ Q75K32_ORYSJ Q75K32_ORYSJ Q7XDP6_ORYSJ Q7XDP6_ORYSJ Q7XM15_ORYSJ Q7XM15_ORYSJ Q7XZG6_ORYSJ Q7XZG6_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0P0VEN2Os02g0137400 protein. (858 aa)
A0A0P0VEP5Os02g0147300 protein. (185 aa)
A0A0P0VIZ4Os02g0478900 protein. (927 aa)
A0A0P0X0F2Os06g0682700 protein. (644 aa)
A0A0P0XE29Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
A0A0P0Y2V6Os11g0495400 protein. (131 aa)
Q0D7W8_ORYSJOs07g0203800 protein. (281 aa)
Q0D7W9_ORYSJOs07g0203700 protein. (666 aa)
OsJ_17170U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing. (253 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0JH94_ORYSJOs01g0876500 protein. (100 aa)
OsJ_10509U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing. (232 aa)
Q33BE1_ORYSJTransposon protein, putative, CACTA, En/Spm sub-class, expressed. (463 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q6K7Q7_ORYSJOs02g0827300 protein. (582 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6Z8Q6_ORYSJSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q7XDP6_ORYSJSplicing factor 3B subunit 4, putative, expressed. (355 aa)
Q7XM15_ORYSJcDNA, clone: J075162F09, full insert sequence. (110 aa)
Q7XZG6_ORYSJPre-mRNA branch site p14, putative, expressed. (130 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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