STRINGSTRING
A0A0N7KJC3 A0A0N7KJC3 A0A0N7KJM0 A0A0N7KJM0 RTEL1 RTEL1 A0A0P0VD80 A0A0P0VD80 A0A0P0VEX5 A0A0P0VEX5 A0A0P0WED8 A0A0P0WED8 A0A0P0WG98 A0A0P0WG98 A0A0P0WGE3 A0A0P0WGE3 A0A0P0WJH1 A0A0P0WJH1 A0A0P0WJI0 A0A0P0WJI0 A0A0P0WR59 A0A0P0WR59 A0A0P0X6J4 A0A0P0X6J4 A0A0P0XZ21 A0A0P0XZ21 A0A0P0Y799 A0A0P0Y799 B7F9H3_ORYSJ B7F9H3_ORYSJ B9FBM0_ORYSJ B9FBM0_ORYSJ B9FMY7_ORYSJ B9FMY7_ORYSJ B9G815_ORYSJ B9G815_ORYSJ C7JAB3_ORYSJ C7JAB3_ORYSJ rpoB rpoB rpoC1 rpoC1 rpoC2 rpoC2 CDKD-1 CDKD-1 Q0DJF8_ORYSJ Q0DJF8_ORYSJ TFIIAy TFIIAy Q0DUA7_ORYSJ Q0DUA7_ORYSJ Q0IMM9_ORYSJ Q0IMM9_ORYSJ Q0IUD4_ORYSJ Q0IUD4_ORYSJ Q0J7Q4_ORYSJ Q0J7Q4_ORYSJ Q0JK78_ORYSJ Q0JK78_ORYSJ CYCH1-1 CYCH1-1 Q10P09_ORYSJ Q10P09_ORYSJ Q10T38_ORYSJ Q10T38_ORYSJ Q2QZU6_ORYSJ Q2QZU6_ORYSJ Q2R4I6_ORYSJ Q2R4I6_ORYSJ Q2RAU2_ORYSJ Q2RAU2_ORYSJ Q53LH8_ORYSJ Q53LH8_ORYSJ Q53QT1_ORYSJ Q53QT1_ORYSJ Q5N8X8_ORYSJ Q5N8X8_ORYSJ Q5SNL8_ORYSJ Q5SNL8_ORYSJ Q5VQW7_ORYSJ Q5VQW7_ORYSJ Q65X21_ORYSJ Q65X21_ORYSJ Q69JW8_ORYSJ Q69JW8_ORYSJ Q69P44_ORYSJ Q69P44_ORYSJ Q6ATY6_ORYSJ Q6ATY6_ORYSJ Q6AUI3_ORYSJ Q6AUI3_ORYSJ OsJ_17019 OsJ_17019 Q6F2V1_ORYSJ Q6F2V1_ORYSJ Q6L4V9_ORYSJ Q6L4V9_ORYSJ Q6YTW7_ORYSJ Q6YTW7_ORYSJ Q6YX88_ORYSJ Q6YX88_ORYSJ Q6Z2N2_ORYSJ Q6Z2N2_ORYSJ Q6Z467_ORYSJ Q6Z467_ORYSJ Q6ZA50_ORYSJ Q6ZA50_ORYSJ Q6ZB67_ORYSJ Q6ZB67_ORYSJ Q6ZC85_ORYSJ Q6ZC85_ORYSJ Q6ZGM1_ORYSJ Q6ZGM1_ORYSJ Q6ZL18_ORYSJ Q6ZL18_ORYSJ Q75M02_ORYSJ Q75M02_ORYSJ Q7XKD9_ORYSJ Q7XKD9_ORYSJ Q8GSD5_ORYSJ Q8GSD5_ORYSJ Q8H7W1_ORYSJ Q8H7W1_ORYSJ Q8LHK9_ORYSJ Q8LHK9_ORYSJ Q8RU47_ORYSJ Q8RU47_ORYSJ TFIIB TFIIB TBP2-2 TBP2-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0N7KJC3General transcription factor IIH subunit. (495 aa)
A0A0N7KJM0Os04g0596800 protein. (95 aa)
RTEL1Regulator of telomere elongation helicase 1 homolog; ATP-dependent DNA helicase implicated in DNA replication, DNA repair and the maintenance of genomic stability. Acts as an anti- recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. (1014 aa)
A0A0P0VD80DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1549 aa)
A0A0P0VEX5Os02g0152700 protein. (416 aa)
A0A0P0WED8Os04g0596850 protein. (94 aa)
A0A0P0WG98Os04g0675800 protein. (1119 aa)
A0A0P0WGE3Os04g0675700 protein. (130 aa)
A0A0P0WJH1Os05g0224700 protein. (210 aa)
A0A0P0WJI0Os05g0219800 protein. (899 aa)
A0A0P0WR59Os06g0100400 protein. (113 aa)
A0A0P0X6J4Os07g0504200 protein. (489 aa)
A0A0P0XZ21Os11g0137400 protein. (104 aa)
A0A0P0Y799Os12g0134300 protein. (176 aa)
B7F9H3_ORYSJcDNA, clone: J080032M07, full insert sequence. (239 aa)
B9FBM0_ORYSJOs03g0176100 protein. (288 aa)
B9FMY7_ORYSJOs05g0198700 protein. (81 aa)
B9G815_ORYSJOs12g0140266 protein. (350 aa)
C7JAB3_ORYSJOs12g0582600 protein. (194 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1075 aa)
rpoC1DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (682 aa)
rpoC2DNA-directed RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1513 aa)
CDKD-1Cyclin-dependent kinase D-1; CDK-activating kinase that may control G1/S phase progression. May control the rate of cell differentiation to accomplish proper development of organs, or in response to a changing environment. Forms a complex with cyclin CYCH1-1 that phosphorylates CDKA-1 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II. (424 aa)
Q0DJF8_ORYSJcDNA clone:J013022M09, full insert sequence. (394 aa)
TFIIAyTranscription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity). Protein involved in the resistance to X.oryzae; Belongs to the TFIIA subunit 2 family. (106 aa)
Q0DUA7_ORYSJOs03g0196900 protein. (295 aa)
Q0IMM9_ORYSJOs12g0560400 protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (104 aa)
Q0IUD4_ORYSJOs11g0166800 protein. (238 aa)
Q0J7Q4_ORYSJOs08g0171600 protein. (462 aa)
Q0JK78_ORYSJOs01g0691600 protein. (580 aa)
CYCH1-1Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. (330 aa)
Q10P09_ORYSJTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
Q10T38_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
Q2QZU6_ORYSJcDNA clone:002-141-D12, full insert sequence. (185 aa)
Q2R4I6_ORYSJCDK-activating kinase assembly factor MAT1 family protein, expressed. (195 aa)
Q2RAU2_ORYSJTranscription initiation factor IIE, alpha subunit, putative, expressed. (170 aa)
Q53LH8_ORYSJDNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed. (74 aa)
Q53QT1_ORYSJTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (529 aa)
Q5N8X8_ORYSJOs01g0772200 protein. (277 aa)
Q5SNL8_ORYSJcDNA clone:J033143J20, full insert sequence. (195 aa)
Q5VQW7_ORYSJcDNA clone:006-211-F07, full insert sequence. (210 aa)
Q65X21_ORYSJOs05g0108500 protein. (65 aa)
Q69JW8_ORYSJcDNA clone:001-202-D10, full insert sequence. (655 aa)
Q69P44_ORYSJOs09g0423300 protein. (962 aa)
Q6ATY6_ORYSJcDNA clone:J023138C10, full insert sequence. (177 aa)
Q6AUI3_ORYSJOs05g0144800 protein. (758 aa)
OsJ_17019Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog; Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation. Belongs to the RPAP2 family. (726 aa)
Q6F2V1_ORYSJDNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed. (142 aa)
Q6L4V9_ORYSJcDNA clone:J023147N17, full insert sequence. (259 aa)
Q6YTW7_ORYSJOs07g0609700 protein. (185 aa)
Q6YX88_ORYSJcDNA clone:006-305-H09, full insert sequence. (330 aa)
Q6Z2N2_ORYSJcDNA clone:J033106M17, full insert sequence. (289 aa)
Q6Z467_ORYSJOs07g0504500 protein. (362 aa)
Q6ZA50_ORYSJcDNA clone:J013053F13, full insert sequence. (120 aa)
Q6ZB67_ORYSJcDNA clone:J013118K08, full insert sequence. (462 aa)
Q6ZC85_ORYSJcDNA clone:J013129O14, full insert sequence. (604 aa)
Q6ZGM1_ORYSJcDNA clone:J023131N03, full insert sequence. (142 aa)
Q6ZL18_ORYSJcDNA clone:J033072E11, full insert sequence. (131 aa)
Q75M02_ORYSJcDNA clone:001-102-A10, full insert sequence. (175 aa)
Q7XKD9_ORYSJRNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
Q8GSD5_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
Q8H7W1_ORYSJTranscription factor TFIIB repeat family protein. (308 aa)
Q8LHK9_ORYSJTranscription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (131 aa)
Q8RU47_ORYSJTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
TFIIBTranscription initiation factor IIB; General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II. (312 aa)
TBP2-2TATA-binding protein 2; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). (203 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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