STRINGSTRING
A0A0N7KF87 A0A0N7KF87 A0A0N7KLX4 A0A0N7KLX4 A0A0P0UY63 A0A0P0UY63 A0A0P0V310 A0A0P0V310 A0A0P0VDJ3 A0A0P0VDJ3 A0A0P0VE60 A0A0P0VE60 A0A0P0VIN6 A0A0P0VIN6 A0A0P0VK87 A0A0P0VK87 A0A0P0VK92 A0A0P0VK92 A0A0P0VLI8 A0A0P0VLI8 A0A0P0VQF0 A0A0P0VQF0 A0A0P0VT87 A0A0P0VT87 A0A0P0W0K7 A0A0P0W0K7 A0A0P0WN72 A0A0P0WN72 A0A0P0WTA4 A0A0P0WTA4 A0A0P0X2I9 A0A0P0X2I9 A0A0P0XPV0 A0A0P0XPV0 A0A0P0XPW5 A0A0P0XPW5 A0A0P0XRT5 A0A0P0XRT5 A0A0P0XYP4 A0A0P0XYP4 B9FF78_ORYSJ B9FF78_ORYSJ B9G1G1_ORYSJ B9G1G1_ORYSJ Q0DJC2_ORYSJ Q0DJC2_ORYSJ Q0DY89_ORYSJ Q0DY89_ORYSJ Q0DY90_ORYSJ Q0DY90_ORYSJ Q0J7C5_ORYSJ Q0J7C5_ORYSJ H3 H3 EMF2A EMF2A Q0JIP0_ORYSJ Q0JIP0_ORYSJ Q10DN8_ORYSJ Q10DN8_ORYSJ MSI1 MSI1 EZ1 EZ1 Q10QT4_ORYSJ Q10QT4_ORYSJ SE14 SE14 Q2QM91_ORYSJ Q2QM91_ORYSJ H2A7_ORYSJ H2A7_ORYSJ Q2QSW7_ORYSJ Q2QSW7_ORYSJ Q2QXT8_ORYSJ Q2QXT8_ORYSJ Q2R8U1_ORYSJ Q2R8U1_ORYSJ H3R-11 H3R-11 Q2RAM1_ORYSJ Q2RAM1_ORYSJ JMJ706 JMJ706 JMJ703 JMJ703 Q5N7H4_ORYSJ Q5N7H4_ORYSJ Q5NAU4_ORYSJ Q5NAU4_ORYSJ CLF CLF Q5Z7N2_ORYSJ Q5Z7N2_ORYSJ Q651B4_ORYSJ Q651B4_ORYSJ Q656M9_ORYSJ Q656M9_ORYSJ Q657G5_ORYSJ Q657G5_ORYSJ EMF2B EMF2B H2B.9 H2B.9 TRX1 TRX1 Q6K7A1_ORYSJ Q6K7A1_ORYSJ OJ1281_H05.14 OJ1281_H05.14 CenH3 CenH3 Q6YTQ8_ORYSJ Q6YTQ8_ORYSJ H2B.2 H2B.2 Q6ZI97_ORYSJ Q6ZI97_ORYSJ EHD3 EHD3 FIE1 FIE1 FIE2 FIE2 OJ1582_D10.26 OJ1582_D10.26 OJ1582_D10.25 OJ1582_D10.25 Q75GI8_ORYSJ Q75GI8_ORYSJ OsJ_016124 OsJ_016124 Q75L16_ORYSJ Q75L16_ORYSJ Q7XD55_ORYSJ Q7XD55_ORYSJ Q7XI22_ORYSJ Q7XI22_ORYSJ Q7XUC9_ORYSJ Q7XUC9_ORYSJ Q7XV45_ORYSJ Q7XV45_ORYSJ OJ1365_D05.1 OJ1365_D05.1 Q851Q5_ORYSJ Q851Q5_ORYSJ Q8H060_ORYSJ Q8H060_ORYSJ Q8H3R1_ORYSJ Q8H3R1_ORYSJ Q8H7N3_ORYSJ Q8H7N3_ORYSJ OJ1607A12.10 OJ1607A12.10 H2B.11 H2B.11 Q94DF0_ORYSJ Q94DF0_ORYSJ OsJ_001872 OsJ_001872 H2B.5 H2B.5 Q9FWU4_ORYSJ Q9FWU4_ORYSJ H2B.6 H2B.6 H2B.8 H2B.8 Q9SNT6_ORYSJ Q9SNT6_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0N7KF87Os02g0457100 protein. (149 aa)
A0A0N7KLX4Os06g0275250 protein. (123 aa)
A0A0P0UY63Os01g0152100 protein. (459 aa)
A0A0P0V310Os01g0502900 protein; Belongs to the histone H2B family. (131 aa)
A0A0P0VDJ3Os01g0965500 protein. (316 aa)
A0A0P0VE60Os02g0122700 protein. (291 aa)
A0A0P0VIN6Os02g0457300 protein. (207 aa)
A0A0P0VK87Os02g0553802 protein. (835 aa)
A0A0P0VK92Os02g0554000 protein. (678 aa)
A0A0P0VLI8Os02g0611300 protein. (267 aa)
A0A0P0VQF0Os02g0784100 protein. (244 aa)
A0A0P0VT87Os03g0144700 protein; Belongs to the histone H2A family. (377 aa)
A0A0P0W0K7Os03g0640201 protein. (149 aa)
A0A0P0WN72Histone H2B; Belongs to the histone H2B family. (106 aa)
A0A0P0WTA4Os06g0159725 protein. (132 aa)
A0A0P0X2I9Os07g0139700 protein. (221 aa)
A0A0P0XPV0Os09g0544500 protein. (314 aa)
A0A0P0XPW5Os09g0488700 protein. (348 aa)
A0A0P0XRT5Os09g0570850 protein; Belongs to the histone H2B family. (152 aa)
A0A0P0XYP4Os11g0145700 protein. (351 aa)
B9FF78_ORYSJOs04g0429100 protein. (518 aa)
B9G1G1_ORYSJOs08g0481100 protein. (434 aa)
Q0DJC2_ORYSJOs05g0302300 protein. (971 aa)
Q0DY89_ORYSJOs02g0708600 protein. (563 aa)
Q0DY90_ORYSJcDNA clone:002-114-G07, full insert sequence. (436 aa)
Q0J7C5_ORYSJcDNA clone:002-101-B01, full insert sequence. (473 aa)
H3Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
EMF2APolycomb group protein EMF2A; Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They act via the methylation of histones, rendering chromatin heritably changed in its expressibility. (624 aa)
Q0JIP0_ORYSJOs01g0786800 protein. (434 aa)
Q10DN8_ORYSJWill die slowly protein, putative, expressed. (324 aa)
MSI1Histone-binding protein MSI1 homolog; Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism such as the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair (By similarity). (428 aa)
EZ1Histone-lysine N-methyltransferase EZ1; Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development (Probable). Involved in the regulation of flowering. Promotes flowering under short day ( [...] (895 aa)
Q10QT4_ORYSJcDNA clone:J013106B15, full insert sequence. (212 aa)
SE14Lysine-specific demethylase SE14; Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. (1487 aa)
Q2QM91_ORYSJSET domain containing protein, expressed. (1212 aa)
H2A7_ORYSJProbable histone H2A.7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
Q2QSW7_ORYSJHistone H3, putative, expressed. (136 aa)
Q2QXT8_ORYSJSPRY domain containing protein, expressed. (414 aa)
Q2R8U1_ORYSJOs11g0216400 protein. (374 aa)
H3R-11Histone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
Q2RAM1_ORYSJcDNA clone:J033110K08, full insert sequence. (420 aa)
JMJ706Lysine-specific demethylase JMJ706; Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me3 and H3K9me2. No activity on H3K4me3, H3K9me1, H3K27me2 and H3K36me3/2. Involved in the control of floral organ development by demethylating H3K9me3 and H3K9me2 in the promoter regions of DH1 and MADS47. The 'Lys-9' demethylation of these two genes is required for induction of their expression. (858 aa)
JMJ703Lysine-specific demethylase JMJ703; Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3, H3K4me2 and H3K4me1. No activity on H3K9me3/2/1, H3K27me3/2/1 and H3K36me3/2/1. Involved in the control of stem elongation by regulating methylation states of H3K4me3 on cytokinin oxidase (CKX) gene family, which may cause increased expression of CKX genes and reduced cytokinin levels. Prevents ectopic retrotransposition by regulating the levels of H3K4me3 in two non-LTR retrotransposons KARMA and LINE-1 (L1) and reinforcing their repressed states. (1238 aa)
Q5N7H4_ORYSJOs01g0884500 protein. (892 aa)
Q5NAU4_ORYSJOs01g0218800 protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (991 aa)
CLFHistone-lysine N-methyltransferase CLF; Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development (Probable). Involved in the regulation of flowering. Represses flowering under long day ( [...] (896 aa)
Q5Z7N2_ORYSJcDNA clone:J013118C12, full insert sequence. (373 aa)
Q651B4_ORYSJcDNA clone:J023088I05, full insert sequence. (427 aa)
Q656M9_ORYSJOs06g0255200 protein. (478 aa)
Q657G5_ORYSJOs01g0324400 protein. (85 aa)
EMF2BPolycomb group protein EMF2B; Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They act via the methylation of histones, rendering chromatin heritably changed in its expressibility (Probable). Polycomb group (PcG) protein involved in the repression of flowering under long day (LD) conditions. Regulates floret development ; Belongs to th [...] (604 aa)
H2B.9Histone H2B.9; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
TRX1Histone-lysine N-methyltransferase TRX1; Possesses histone H3 methyltransferase activity in vitro. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Functions as a receptor for the lipid messenger phosphatidylinositol 5-phosphate (PI5P), which regulates negatively its transcriptional activation activity (By similarity). Involved in the regulation of flowering time and floral induction under long day (LD) conditions. Acts as an activator of flowering under LD conditions. May function through binding to EHD3, a r [...] (1022 aa)
Q6K7A1_ORYSJcDNA clone:J013042H05, full insert sequence. (467 aa)
OJ1281_H05.14Probable histone H2A.4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (163 aa)
CenH3Centromeric histone 3. (164 aa)
Q6YTQ8_ORYSJOs08g0333100 protein. (481 aa)
H2B.2Histone H2B.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (150 aa)
Q6ZI97_ORYSJOs08g0530500 protein. (207 aa)
EHD3PHD finger protein EHD3; Probable transcription factor involved in the regulation of floral induction under long day (LD) conditions. Promotes photoperiodic flowering by repressing GHD7, a major floral repressor. Seems to function independently of HD1. (563 aa)
FIE1Polycomb group protein FIE1; Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Together with EZ1 and CLF forms a complex that is involved in gene transcriptional repression by trimethylation on histone H3 'Lys-27' (H3K27me3) of target g [...] (466 aa)
FIE2Polycomb group protein FIE1; Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Involved in the regulation of seed endosperm development, grain filling and seed dormancy. FIE2-containing PcG complex in seed endosperm regulates the expres [...] (376 aa)
OJ1582_D10.26Probable histone H2A.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
OJ1582_D10.25Probable histone H2A.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
Q75GI8_ORYSJcDNA clone:J023028O14, full insert sequence. (475 aa)
OsJ_016124Probable histone H2A.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (156 aa)
Q75L16_ORYSJcDNA clone:J013095H10, full insert sequence. (458 aa)
Q7XD55_ORYSJSecretory protein, putative. (228 aa)
Q7XI22_ORYSJOs07g0186400 protein. (218 aa)
Q7XUC9_ORYSJHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
Q7XV45_ORYSJOs04g0450900 protein. (470 aa)
OJ1365_D05.1Probable histone H2A variant 3; Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone cod [...] (137 aa)
Q851Q5_ORYSJcDNA clone:006-212-B02, full insert sequence. (218 aa)
Q8H060_ORYSJRetinoblastoma-binding protein, putative, expressed. (570 aa)
Q8H3R1_ORYSJcDNA clone:001-100-G09, full insert sequence. (439 aa)
Q8H7N3_ORYSJcDNA clone:J023004E23, full insert sequence. (477 aa)
OJ1607A12.10Probable histone H2A variant 1; Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone cod [...] (138 aa)
H2B.11Histone H2B.11; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (139 aa)
Q94DF0_ORYSJcDNA clone:J023130C15, full insert sequence. (158 aa)
OsJ_001872Probable histone H2A.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (159 aa)
H2B.5Histone H2B.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (155 aa)
Q9FWU4_ORYSJcDNA clone:001-030-F02, full insert sequence. (229 aa)
H2B.6Histone H2B.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.8Histone H2B.8; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
Q9SNT6_ORYSJcDNA clone:J033093J06, full insert sequence. (433 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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