STRINGSTRING
Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q5JJU2_ORYSJ Q5JJU2_ORYSJ U2AF65A U2AF65A U2AF65B U2AF65B Q10Q44_ORYSJ Q10Q44_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q10B15_ORYSJ Q10B15_ORYSJ A0A0P0WB93 A0A0P0WB93 A0A0P0VST4 A0A0P0VST4 A0A0P0VD95 A0A0P0VD95 Q7EYN1_ORYSJ Q7EYN1_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q5JJU2_ORYSJcDNA clone:J033112L14, full insert sequence. (608 aa)
U2AF65ASplicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA. (574 aa)
U2AF65BSplicing factor U2af large subunit B; Necessary for the splicing of pre-mRNA. (548 aa)
Q10Q44_ORYSJPre-mRNA processing protein prp39, putative, expressed. (789 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q10B15_ORYSJcDNA clone:002-149-C11, full insert sequence. (574 aa)
A0A0P0WB93Os04g0470150 protein. (76 aa)
A0A0P0VST4Os03g0138100 protein. (643 aa)
A0A0P0VD95Os01g0961300 protein. (151 aa)
Q7EYN1_ORYSJOs08g0379000 protein. (1161 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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