STRINGSTRING
A0A0P0V1B4 A0A0P0V1B4 OsJ_01157 OsJ_01157 Q8H4L0_ORYSJ Q8H4L0_ORYSJ Q7XU07_ORYSJ Q7XU07_ORYSJ Q75K32_ORYSJ Q75K32_ORYSJ Q6Z6C8_ORYSJ Q6Z6C8_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q5WMV0_ORYSJ Q5WMV0_ORYSJ Q53MI2_ORYSJ Q53MI2_ORYSJ Q2R066_ORYSJ Q2R066_ORYSJ Q2QTN6_ORYSJ Q2QTN6_ORYSJ Q2QLX7_ORYSJ Q2QLX7_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q10P28_ORYSJ Q10P28_ORYSJ Q10A23_ORYSJ Q10A23_ORYSJ Q0J803_ORYSJ Q0J803_ORYSJ Q0IWN2_ORYSJ Q0IWN2_ORYSJ Q0DB62_ORYSJ Q0DB62_ORYSJ A0A0P0Y9A7 A0A0P0Y9A7 A0A0P0Y3X2 A0A0P0Y3X2 A0A0P0WSW9 A0A0P0WSW9 A0A0P0WIH1 A0A0P0WIH1 A0A0P0WB93 A0A0P0WB93 A0A0P0W6D8 A0A0P0W6D8 A0A0P0VPC8 A0A0P0VPC8 A0A0P0VP35 A0A0P0VP35 A0A0P0VDD6 A0A0P0VDD6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0P0V1B4Os01g0263600 protein. (737 aa)
OsJ_01157Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
Q8H4L0_ORYSJOs07g0141600 protein. (484 aa)
Q7XU07_ORYSJcDNA clone:J013052N06, full insert sequence. (484 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6Z6C8_ORYSJOs02g0205400 protein. (342 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
Q53MI2_ORYSJSurvival motor neuron containing protein, expressed. (366 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
Q2QTN6_ORYSJOs12g0288600 protein. (561 aa)
Q2QLX7_ORYSJOs12g0624800 protein. (587 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q10P28_ORYSJNucleotide-sensitive chloride conductance regulator family protein, expressed. (232 aa)
Q10A23_ORYSJNucleotide-sensitive chloride conductance regulator family protein, expressed. (225 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0IWN2_ORYSJOs10g0498600 protein. (428 aa)
Q0DB62_ORYSJOs06g0598900 protein. (342 aa)
A0A0P0Y9A7Os12g0288801 protein. (101 aa)
A0A0P0Y3X2Os11g0580000 protein. (467 aa)
A0A0P0WSW9Os06g0167000 protein. (1130 aa)
A0A0P0WIH1Os05g0163250 protein. (559 aa)
A0A0P0WB93Os04g0470150 protein. (76 aa)
A0A0P0W6D8Os04g0132300 protein. (399 aa)
A0A0P0VPC8Os02g0730100 protein. (147 aa)
A0A0P0VP35Os02g0730200 protein. (146 aa)
A0A0P0VDD6Small nuclear ribonucleoprotein Sm D2. (103 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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