STRINGSTRING
Q10PA9_ORYSJ Q10PA9_ORYSJ Q0J803_ORYSJ Q0J803_ORYSJ A0A0P0VDD6 A0A0P0VDD6 A0A0P0WB93 A0A0P0WB93 A0A0P0WIH1 A0A0P0WIH1 A0A0P0WSW9 A0A0P0WSW9 B7ERU0_ORYSJ B7ERU0_ORYSJ A0A0N7KHW2 A0A0N7KHW2 DIM1 DIM1 Q75K32_ORYSJ Q75K32_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6YTU8_ORYSJ Q6YTU8_ORYSJ Q5WMV0_ORYSJ Q5WMV0_ORYSJ Q53MQ0_ORYSJ Q53MQ0_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
A0A0P0VDD6Small nuclear ribonucleoprotein Sm D2. (103 aa)
A0A0P0WB93Os04g0470150 protein. (76 aa)
A0A0P0WIH1Os05g0163250 protein. (559 aa)
A0A0P0WSW9Os06g0167000 protein. (1130 aa)
B7ERU0_ORYSJcDNA clone:J033042L23, full insert sequence. (427 aa)
A0A0N7KHW2Os03g0701100 protein. (318 aa)
DIM1Thioredoxin-like protein 4A, putative, expressed. (142 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6YTU8_ORYSJcDNA clone:J033051L15, full insert sequence. (438 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
Q53MQ0_ORYSJThioredoxin-like protein 4B, putative, expressed. (152 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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