STRINGSTRING
Q2R4I6_ORYSJ Q2R4I6_ORYSJ Q53LH8_ORYSJ Q53LH8_ORYSJ Q53QT1_ORYSJ Q53QT1_ORYSJ Q5JKG7_ORYSJ Q5JKG7_ORYSJ Q5N796_ORYSJ Q5N796_ORYSJ Q5N8X8_ORYSJ Q5N8X8_ORYSJ Q5QMA1_ORYSJ Q5QMA1_ORYSJ A0A0P0WFD3 A0A0P0WFD3 A0A0P0W5J3 A0A0P0W5J3 A0A0P0W1G0 A0A0P0W1G0 Q5SNL8_ORYSJ Q5SNL8_ORYSJ Q5VQW7_ORYSJ Q5VQW7_ORYSJ Q5W6Q8_ORYSJ Q5W6Q8_ORYSJ Q65X21_ORYSJ Q65X21_ORYSJ Q67UR9_ORYSJ Q67UR9_ORYSJ TAF1 TAF1 Q69MK0_ORYSJ Q69MK0_ORYSJ Q69NE0_ORYSJ Q69NE0_ORYSJ Q69P44_ORYSJ Q69P44_ORYSJ Q6ATY6_ORYSJ Q6ATY6_ORYSJ Q6F2V1_ORYSJ Q6F2V1_ORYSJ Q6H7I0_ORYSJ Q6H7I0_ORYSJ Q6L4V9_ORYSJ Q6L4V9_ORYSJ Q6YTW3_ORYSJ Q6YTW3_ORYSJ Q6YTW5_ORYSJ Q6YTW5_ORYSJ Q6YTW7_ORYSJ Q6YTW7_ORYSJ Q6YTW9_ORYSJ Q6YTW9_ORYSJ Q6YTX4_ORYSJ Q6YTX4_ORYSJ Q6YX88_ORYSJ Q6YX88_ORYSJ Q6Z2N2_ORYSJ Q6Z2N2_ORYSJ Q6Z8D5_ORYSJ Q6Z8D5_ORYSJ Q6ZA50_ORYSJ Q6ZA50_ORYSJ Q6ZB67_ORYSJ Q6ZB67_ORYSJ Q6ZC85_ORYSJ Q6ZC85_ORYSJ Q6ZD92_ORYSJ Q6ZD92_ORYSJ Q6ZGM1_ORYSJ Q6ZGM1_ORYSJ Q6ZL18_ORYSJ Q6ZL18_ORYSJ Q75GC3_ORYSJ Q75GC3_ORYSJ Q7XKD9_ORYSJ Q7XKD9_ORYSJ Q7XRB2_ORYSJ Q7XRB2_ORYSJ Q7XS72_ORYSJ Q7XS72_ORYSJ Q84SP5_ORYSJ Q84SP5_ORYSJ Q8GSD5_ORYSJ Q8GSD5_ORYSJ Q8H5X9_ORYSJ Q8H5X9_ORYSJ Q8H5Y4_ORYSJ Q8H5Y4_ORYSJ Q8H9E4_ORYSJ Q8H9E4_ORYSJ Q8LI69_ORYSJ Q8LI69_ORYSJ Q8LRG9_ORYSJ Q8LRG9_ORYSJ Q8RU47_ORYSJ Q8RU47_ORYSJ A0A0P0VS40 A0A0P0VS40 A0A0P0V621 A0A0P0V621 A0A0N7KTC4 A0A0N7KTC4 A0A0N7KS24 A0A0N7KS24 A0A0N7KPV9 A0A0N7KPV9 A0A0N7KJC3 A0A0N7KJC3 A0A0N7KI28 A0A0N7KI28 Q2QN90_ORYSJ Q2QN90_ORYSJ Q2QN51_ORYSJ Q2QN51_ORYSJ Q10T38_ORYSJ Q10T38_ORYSJ Q10P09_ORYSJ Q10P09_ORYSJ Q10JT5_ORYSJ Q10JT5_ORYSJ Q10IZ0_ORYSJ Q10IZ0_ORYSJ CYCH1-1 CYCH1-1 Q0JM77_ORYSJ Q0JM77_ORYSJ Q0JK78_ORYSJ Q0JK78_ORYSJ Q0JHK4_ORYSJ Q0JHK4_ORYSJ Q0J7Q4_ORYSJ Q0J7Q4_ORYSJ Q0IMW0_ORYSJ Q0IMW0_ORYSJ Q0IMM9_ORYSJ Q0IMM9_ORYSJ C3H20_ORYSJ C3H20_ORYSJ Q0DQE7_ORYSJ Q0DQE7_ORYSJ TFIIAy TFIIAy Q0DJF8_ORYSJ Q0DJF8_ORYSJ Q0D934_ORYSJ Q0D934_ORYSJ CDKD-1 CDKD-1 A0A0P0X1I6 A0A0P0X1I6 A0A0P0X3D9 A0A0P0X3D9 A0A0P0X8M3 A0A0P0X8M3 A0A0P0X8U6 A0A0P0X8U6 A0A0P0XEP3 A0A0P0XEP3 A0A0P0XLI9 A0A0P0XLI9 A0A0P0XM51 A0A0P0XM51 A0A0P0XQG2 A0A0P0XQG2 A0A0P0XW57 A0A0P0XW57 A0A0P0XZ21 A0A0P0XZ21 A0A0P0Y799 A0A0P0Y799 A0A0P0Y7J1 A0A0P0Y7J1 A3BMZ6_ORYSJ A3BMZ6_ORYSJ A0A0P0X0W6 A0A0P0X0W6 A0A0P0WZS5 A0A0P0WZS5 A0A0P0WS85 A0A0P0WS85 A0A0P0WR59 A0A0P0WR59 A0A0P0WNZ6 A0A0P0WNZ6 A0A0P0WI29 A0A0P0WI29 B7EQI7_ORYSJ B7EQI7_ORYSJ B9EXB4_ORYSJ B9EXB4_ORYSJ B9FBM0_ORYSJ B9FBM0_ORYSJ B9FEJ8_ORYSJ B9FEJ8_ORYSJ B9FMY7_ORYSJ B9FMY7_ORYSJ B9G815_ORYSJ B9G815_ORYSJ C7J4C7_ORYSJ C7J4C7_ORYSJ C7J5G7_ORYSJ C7J5G7_ORYSJ C7J5J8_ORYSJ C7J5J8_ORYSJ Q2QZU6_ORYSJ Q2QZU6_ORYSJ Q2R037_ORYSJ Q2R037_ORYSJ Q2RAU2_ORYSJ Q2RAU2_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q2R4I6_ORYSJCDK-activating kinase assembly factor MAT1 family protein, expressed. (195 aa)
Q53LH8_ORYSJDNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed. (74 aa)
Q53QT1_ORYSJTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (529 aa)
Q5JKG7_ORYSJcDNA clone:J033143H08, full insert sequence. (490 aa)
Q5N796_ORYSJOs01g0846900 protein. (542 aa)
Q5N8X8_ORYSJOs01g0772200 protein. (277 aa)
Q5QMA1_ORYSJcDNA clone:J013126J05, full insert sequence. (211 aa)
A0A0P0WFD3DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1252 aa)
A0A0P0W5J3Os03g0847800 protein. (42 aa)
A0A0P0W1G0Os03g0646800 protein. (195 aa)
Q5SNL8_ORYSJcDNA clone:J033143J20, full insert sequence. (195 aa)
Q5VQW7_ORYSJcDNA clone:006-211-F07, full insert sequence. (210 aa)
Q5W6Q8_ORYSJcDNA clone:001-101-F01, full insert sequence. (200 aa)
Q65X21_ORYSJOs05g0108500 protein. (65 aa)
Q67UR9_ORYSJOs06g0649500 protein. (654 aa)
TAF1Transcription initiation factor TFIID subunit 1; Largest component and core scaffold of the TFIID basal transcription factor complex. (1810 aa)
Q69MK0_ORYSJTranscription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (165 aa)
Q69NE0_ORYSJOs09g0410300 protein. (224 aa)
Q69P44_ORYSJOs09g0423300 protein. (962 aa)
Q6ATY6_ORYSJcDNA clone:J023138C10, full insert sequence. (177 aa)
Q6F2V1_ORYSJDNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed. (142 aa)
Q6H7I0_ORYSJcDNA clone:J023007I15, full insert sequence. (728 aa)
Q6L4V9_ORYSJcDNA clone:J023147N17, full insert sequence. (259 aa)
Q6YTW3_ORYSJOs07g0610200 protein. (237 aa)
Q6YTW5_ORYSJOs07g0609800 protein. (167 aa)
Q6YTW7_ORYSJOs07g0609700 protein. (185 aa)
Q6YTW9_ORYSJOs07g0609600 protein. (185 aa)
Q6YTX4_ORYSJOs07g0609100 protein. (258 aa)
Q6YX88_ORYSJcDNA clone:006-305-H09, full insert sequence. (330 aa)
Q6Z2N2_ORYSJcDNA clone:J033106M17, full insert sequence. (289 aa)
Q6Z8D5_ORYSJOs02g0699900 protein. (239 aa)
Q6ZA50_ORYSJcDNA clone:J013053F13, full insert sequence. (120 aa)
Q6ZB67_ORYSJcDNA clone:J013118K08, full insert sequence. (462 aa)
Q6ZC85_ORYSJcDNA clone:J013129O14, full insert sequence. (604 aa)
Q6ZD92_ORYSJOs08g0157100 protein. (451 aa)
Q6ZGM1_ORYSJcDNA clone:J023131N03, full insert sequence. (142 aa)
Q6ZL18_ORYSJcDNA clone:J033072E11, full insert sequence. (131 aa)
Q75GC3_ORYSJRNA pol II accessory factor, Cdc73 family protein, expressed. (375 aa)
Q7XKD9_ORYSJRNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
Q7XRB2_ORYSJOs04g0437200 protein. (335 aa)
Q7XS72_ORYSJcDNA clone:J033138G07, full insert sequence. (365 aa)
Q84SP5_ORYSJRNA polymerase Rpb8 family protein, expressed; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (148 aa)
Q8GSD5_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
Q8H5X9_ORYSJOs07g0612500 protein. (425 aa)
Q8H5Y4_ORYSJOs07g0611500 protein. (259 aa)
Q8H9E4_ORYSJPutative TPR-containing nuclear phosphoprotein. (1069 aa)
Q8LI69_ORYSJcDNA clone:J033097N04, full insert sequence. (142 aa)
Q8LRG9_ORYSJcDNA clone:J023036C23, full insert sequence. (541 aa)
Q8RU47_ORYSJTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
A0A0P0VS40Os03g0112600 protein. (395 aa)
A0A0P0V621Os01g0648500 protein. (196 aa)
A0A0N7KTC4Os11g0676650 protein. (80 aa)
A0A0N7KS24Os10g0511800 protein. (216 aa)
A0A0N7KPV9Os08g0426000 protein. (308 aa)
A0A0N7KJC3General transcription factor IIH subunit. (495 aa)
A0A0N7KI28Os03g0756500 protein. (416 aa)
Q2QN90_ORYSJBromodomain associated family protein, expressed. (366 aa)
Q2QN51_ORYSJcDNA clone:002-108-C04, full insert sequence. (663 aa)
Q10T38_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
Q10P09_ORYSJTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
Q10JT5_ORYSJTranscription initiation factor IID, 31kD subunit family protein, expressed. (224 aa)
Q10IZ0_ORYSJTranscription initiation factor TFIID component TAF4 family protein, expressed. (819 aa)
CYCH1-1Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. (330 aa)
Q0JM77_ORYSJOs01g0530300 protein. (204 aa)
Q0JK78_ORYSJOs01g0691600 protein. (580 aa)
Q0JHK4_ORYSJOs01g0858500 protein. (301 aa)
Q0J7Q4_ORYSJOs08g0171600 protein. (462 aa)
Q0IMW0_ORYSJOs12g0535900 protein. (599 aa)
Q0IMM9_ORYSJOs12g0560400 protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (104 aa)
C3H20_ORYSJZinc finger CCCH domain-containing protein 20. (707 aa)
Q0DQE7_ORYSJOs03g0603300 protein. (279 aa)
TFIIAyTranscription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity). Protein involved in the resistance to X.oryzae; Belongs to the TFIIA subunit 2 family. (106 aa)
Q0DJF8_ORYSJcDNA clone:J013022M09, full insert sequence. (394 aa)
Q0D934_ORYSJOs07g0109600 protein. (476 aa)
CDKD-1Cyclin-dependent kinase D-1; CDK-activating kinase that may control G1/S phase progression. May control the rate of cell differentiation to accomplish proper development of organs, or in response to a changing environment. Forms a complex with cyclin CYCH1-1 that phosphorylates CDKA-1 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II. (424 aa)
A0A0P0X1I6Os07g0105100 protein. (62 aa)
A0A0P0X3D9Os07g0205200 protein. (91 aa)
A0A0P0X8M3Os07g0611200 protein. (208 aa)
A0A0P0X8U6Os07g0610700 protein. (253 aa)
A0A0P0XEP3Os08g0332100 protein. (77 aa)
A0A0P0XLI9Os09g0410125 protein. (322 aa)
A0A0P0XM51Os09g0409950 protein. (194 aa)
A0A0P0XQG2Os09g0530500 protein. (445 aa)
A0A0P0XW57Os10g0511900 protein. (456 aa)
A0A0P0XZ21Os11g0137400 protein. (104 aa)
A0A0P0Y799Os12g0134300 protein. (176 aa)
A0A0P0Y7J1Os12g0180400 protein. (103 aa)
A3BMZ6_ORYSJOs07g0656300 protein. (238 aa)
A0A0P0X0W6Os06g0697400 protein. (103 aa)
A0A0P0WZS5Os06g0645901 protein. (339 aa)
A0A0P0WS85Os06g0115950 protein. (147 aa)
A0A0P0WR59Os06g0100400 protein. (113 aa)
A0A0P0WNZ6Os05g0493133 protein. (217 aa)
A0A0P0WI29DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1842 aa)
B7EQI7_ORYSJcDNA clone:J023098I05, full insert sequence. (167 aa)
B9EXB4_ORYSJOs01g0530366 protein. (52 aa)
B9FBM0_ORYSJOs03g0176100 protein. (288 aa)
B9FEJ8_ORYSJOs04g0347900 protein. (633 aa)
B9FMY7_ORYSJOs05g0198700 protein. (81 aa)
B9G815_ORYSJOs12g0140266 protein. (350 aa)
C7J4C7_ORYSJOs06g0645800 protein. (880 aa)
C7J5G7_ORYSJOs08g0268000 protein. (241 aa)
C7J5J8_ORYSJOs08g0155700 protein. (61 aa)
Q2QZU6_ORYSJcDNA clone:002-141-D12, full insert sequence. (185 aa)
Q2R037_ORYSJOs11g0660300 protein. (323 aa)
Q2RAU2_ORYSJTranscription initiation factor IIE, alpha subunit, putative, expressed. (170 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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