35 items (Oryza sativa Japonica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	Q7XIB4_ORYSJ	Os07g0596600 protein. (707 aa)
	Q8LJL5_ORYSJ	cDNA clone:001-022-E12, full insert sequence. (319 aa)
	Q6ZCC7_ORYSJ	Os08g0112500 protein. (748 aa)
	P0560B06.11	Putative CRK1 protein. (558 aa)
	A0A0P0XGE1	Os08g0404350 protein. (220 aa)
	A0A0P0XKG2	Os09g0268900 protein. (149 aa)
	CDKC-1-2	Cyclin-dependent kinase C-3. (324 aa)
	Q6YU34_ORYSJ	cDNA clone:J023088A16, full insert sequence. (729 aa)
	CDKC-1	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (519 aa)
	Q6EP11_ORYSJ	Os09g0291500 protein. (167 aa)
	CDKC-2	Cyclin-dependent kinase C-2; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (513 aa)
	Q53QT1_ORYSJ	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (529 aa)
	Q53N86_ORYSJ	Protein kinase domain containing protein, expressed. (579 aa)
	CDKF-2	Putative cyclin-dependent kinase F-2. (327 aa)
	Q2QRX9_ORYSJ	Metallopeptidase family M24 containing protein, expressed. (1069 aa)
	Q2QN51_ORYSJ	cDNA clone:002-108-C04, full insert sequence. (663 aa)
	Q0DH32_ORYSJ	Os05g0494900 protein. (342 aa)
	Q10P09_ORYSJ	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
	Q75GC3_ORYSJ	RNA pol II accessory factor, Cdc73 family protein, expressed. (375 aa)
	SPT16	FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (1056 aa)
	Q8LHK9_ORYSJ	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (131 aa)
	A0A0P0Y081	Os11g0218560 protein. (79 aa)
	A0A0N7KI28	Os03g0756500 protein. (416 aa)
	A0A0N7KJZ7	Os04g0693100 protein. (208 aa)
	A0A0N7KSM5	Os11g0218678 protein. (75 aa)
	A0A0P0UZC0	Os01g0201000 protein. (128 aa)
	A0A0P0VXG3	Os03g0349200 protein. (130 aa)
	A0A0P0WP66	Os05g0494800 protein. (83 aa)
	A0A0P0XA24	Os07g0668000 protein. (31 aa)
	A0A0P0Y0B2	Os11g0218619 protein. (125 aa)
	A0A0P0Y0D5	Os11g0218737 protein. (144 aa)
	A0A0P0Y9L2	Os12g0427000 protein. (426 aa)
	C7J5J3_ORYSJ	Os08g0404400 protein. (307 aa)
	C7JAB9_ORYSJ	Os12g0203000 protein. (273 aa)
	Q0D934_ORYSJ	Os07g0109600 protein. (476 aa)

Your Current Organism:

Oryza sativa Japonica

NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0N7KI28	A0A0P0WP66	A0A0N7KI28	A0A0P0WP66	Os03g0756500 protein.	Os05g0494800 protein.	0.858
A0A0N7KI28	A0A0P0XGE1	A0A0N7KI28	A0A0P0XGE1	Os03g0756500 protein.	Os08g0404350 protein.	0.961
A0A0N7KI28	A0A0P0XKG2	A0A0N7KI28	A0A0P0XKG2	Os03g0756500 protein.	Os09g0268900 protein.	0.858
A0A0N7KI28	C7J5J3_ORYSJ	A0A0N7KI28	C7J5J3	Os03g0756500 protein.	Os08g0404400 protein.	0.942
A0A0N7KI28	Q0DH32_ORYSJ	A0A0N7KI28	Q0DH32	Os03g0756500 protein.	Os05g0494900 protein.	0.905
A0A0N7KI28	Q2QRX9_ORYSJ	A0A0N7KI28	Q2QRX9	Os03g0756500 protein.	Metallopeptidase family M24 containing protein, expressed.	0.961
A0A0N7KI28	Q6EP11_ORYSJ	A0A0N7KI28	Q6EP11	Os03g0756500 protein.	Os09g0291500 protein.	0.858
A0A0N7KI28	Q75GC3_ORYSJ	A0A0N7KI28	Q75GC3	Os03g0756500 protein.	RNA pol II accessory factor, Cdc73 family protein, expressed.	0.991
A0A0N7KI28	Q8LHK9_ORYSJ	A0A0N7KI28	Q8LHK9	Os03g0756500 protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.949
A0A0N7KI28	Q8LJL5_ORYSJ	A0A0N7KI28	Q8LJL5	Os03g0756500 protein.	cDNA clone:001-022-E12, full insert sequence.	0.475
A0A0N7KI28	SPT16	A0A0N7KI28	Q7X923	Os03g0756500 protein.	FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.961
A0A0N7KJZ7	A0A0P0XGE1	A0A0N7KJZ7	A0A0P0XGE1	Os04g0693100 protein.	Os08g0404350 protein.	0.641
A0A0N7KJZ7	C7J5J3_ORYSJ	A0A0N7KJZ7	C7J5J3	Os04g0693100 protein.	Os08g0404400 protein.	0.641
A0A0N7KJZ7	Q2QRX9_ORYSJ	A0A0N7KJZ7	Q2QRX9	Os04g0693100 protein.	Metallopeptidase family M24 containing protein, expressed.	0.641
A0A0N7KJZ7	Q75GC3_ORYSJ	A0A0N7KJZ7	Q75GC3	Os04g0693100 protein.	RNA pol II accessory factor, Cdc73 family protein, expressed.	0.500
A0A0N7KJZ7	Q8LHK9_ORYSJ	A0A0N7KJZ7	Q8LHK9	Os04g0693100 protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.739
A0A0N7KJZ7	SPT16	A0A0N7KJZ7	Q7X923	Os04g0693100 protein.	FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.641
A0A0N7KSM5	A0A0P0XGE1	A0A0N7KSM5	A0A0P0XGE1	Os11g0218678 protein.	Os08g0404350 protein.	0.641
A0A0N7KSM5	C7J5J3_ORYSJ	A0A0N7KSM5	C7J5J3	Os11g0218678 protein.	Os08g0404400 protein.	0.641
A0A0N7KSM5	Q2QRX9_ORYSJ	A0A0N7KSM5	Q2QRX9	Os11g0218678 protein.	Metallopeptidase family M24 containing protein, expressed.	0.641

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