30 items (Oryza sativa Japonica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	P0560B06.11	Putative CRK1 protein. (558 aa)
	A0A0P0YBP9	Os12g0577700 protein. (740 aa)
	A0A0P0Y9L2	Os12g0427000 protein. (426 aa)
	A0A0P0Y0D5	Os11g0218737 protein. (144 aa)
	A0A0P0Y0B2	Os11g0218619 protein. (125 aa)
	CYCH1-1	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. (330 aa)
	CDKF-2	Putative cyclin-dependent kinase F-2. (327 aa)
	Q53N86_ORYSJ	Protein kinase domain containing protein, expressed. (579 aa)
	CDKC-2	Cyclin-dependent kinase C-2; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (513 aa)
	Q65X21_ORYSJ	Os05g0108500 protein. (65 aa)
	CDKC-1	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (519 aa)
	Q6YU34_ORYSJ	cDNA clone:J023088A16, full insert sequence. (729 aa)
	Q6Z2N2_ORYSJ	cDNA clone:J033106M17, full insert sequence. (289 aa)
	CDKC-1-2	Cyclin-dependent kinase C-3. (324 aa)
	Q6ZC85_ORYSJ	cDNA clone:J013129O14, full insert sequence. (604 aa)
	Q6ZCC7_ORYSJ	Os08g0112500 protein. (748 aa)
	Q6ZL18_ORYSJ	cDNA clone:J033072E11, full insert sequence. (131 aa)
	Q7XIB4_ORYSJ	Os07g0596600 protein. (707 aa)
	A0A0P0Y081	Os11g0218560 protein. (79 aa)
	A0A0P0XA24	Os07g0668000 protein. (31 aa)
	A0A0P0VI47	Os02g0304500 protein. (521 aa)
	A0A0P0WR59	Os06g0100400 protein. (113 aa)
	A0A0P0VXG3	Os03g0349200 protein. (130 aa)
	C7JAB9_ORYSJ	Os12g0203000 protein. (273 aa)
	A0A0N7KJZ7	Os04g0693100 protein. (208 aa)
	A0A0N7KSM5	Os11g0218678 protein. (75 aa)
	A0A0P0UZC0	Os01g0201000 protein. (128 aa)
	A0A0P0VC65	Os01g0925700 protein. (371 aa)
	B9FMY7_ORYSJ	Os05g0198700 protein. (81 aa)
	Q7XKD9_ORYSJ	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)

Your Current Organism:

Oryza sativa Japonica

NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0N7KJZ7	CYCH1-1	A0A0N7KJZ7	Q10D80	Os04g0693100 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0N7KSM5	CYCH1-1	A0A0N7KSM5	Q10D80	Os11g0218678 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0UZC0	CYCH1-1	A0A0P0UZC0	Q10D80	Os01g0201000 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0VC65	CYCH1-1	A0A0P0VC65	Q10D80	Os01g0925700 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0VI47	CYCH1-1	A0A0P0VI47	Q10D80	Os02g0304500 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0VXG3	CYCH1-1	A0A0P0VXG3	Q10D80	Os03g0349200 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0WR59	B9FMY7_ORYSJ	A0A0P0WR59	B9FMY7	Os06g0100400 protein.	Os05g0198700 protein.	0.957
A0A0P0WR59	CYCH1-1	A0A0P0WR59	Q10D80	Os06g0100400 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.984
A0A0P0WR59	Q65X21_ORYSJ	A0A0P0WR59	Q65X21	Os06g0100400 protein.	Os05g0108500 protein.	0.957
A0A0P0WR59	Q6Z2N2_ORYSJ	A0A0P0WR59	Q6Z2N2	Os06g0100400 protein.	cDNA clone:J033106M17, full insert sequence.	0.993
A0A0P0WR59	Q6ZC85_ORYSJ	A0A0P0WR59	Q6ZC85	Os06g0100400 protein.	cDNA clone:J013129O14, full insert sequence.	0.993
A0A0P0WR59	Q6ZL18_ORYSJ	A0A0P0WR59	Q6ZL18	Os06g0100400 protein.	cDNA clone:J033072E11, full insert sequence.	0.957
A0A0P0XA24	CYCH1-1	A0A0P0XA24	Q10D80	Os07g0668000 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0Y081	CYCH1-1	A0A0P0Y081	Q10D80	Os11g0218560 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0Y0B2	CYCH1-1	A0A0P0Y0B2	Q10D80	Os11g0218619 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0Y0D5	CYCH1-1	A0A0P0Y0D5	Q10D80	Os11g0218737 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
A0A0P0YBP9	CYCH1-1	A0A0P0YBP9	Q10D80	Os12g0577700 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.711
B9FMY7_ORYSJ	A0A0P0WR59	B9FMY7	A0A0P0WR59	Os05g0198700 protein.	Os06g0100400 protein.	0.957
B9FMY7_ORYSJ	CYCH1-1	B9FMY7	Q10D80	Os05g0198700 protein.	Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.	0.909
B9FMY7_ORYSJ	Q65X21_ORYSJ	B9FMY7	Q65X21	Os05g0198700 protein.	Os05g0108500 protein.	0.540

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About