STRINGSTRING
Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YTU8_ORYSJ Q6YTU8_ORYSJ Q6K8R4_ORYSJ Q6K8R4_ORYSJ Q6K7Q7_ORYSJ Q6K7Q7_ORYSJ Q6K2E9_ORYSJ Q6K2E9_ORYSJ Q6EUD5_ORYSJ Q6EUD5_ORYSJ Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q69V60_ORYSJ Q69V60_ORYSJ Q69IN4_ORYSJ Q69IN4_ORYSJ LSM5 LSM5 Q5WMV0_ORYSJ Q5WMV0_ORYSJ LSM8 LSM8 LSM3 LSM3 Q53MQ0_ORYSJ Q53MQ0_ORYSJ Q33BE1_ORYSJ Q33BE1_ORYSJ Q2R066_ORYSJ Q2R066_ORYSJ Q10R21_ORYSJ Q10R21_ORYSJ Q10Q44_ORYSJ Q10Q44_ORYSJ Q10Q04_ORYSJ Q10Q04_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q10PA5_ORYSJ Q10PA5_ORYSJ Q10NP6_ORYSJ Q10NP6_ORYSJ OsJ_10509 OsJ_10509 Q10LA2_ORYSJ Q10LA2_ORYSJ OJ1111_B11.10 OJ1111_B11.10 Q0J803_ORYSJ Q0J803_ORYSJ Q0J7Y5_ORYSJ Q0J7Y5_ORYSJ Q0JDN9_ORYSJ Q0JDN9_ORYSJ A0A0N7KHW2 A0A0N7KHW2 A0A0N7KQF0 A0A0N7KQF0 A0A0P0V1B4 A0A0P0V1B4 A0A0P0V3J7 A0A0P0V3J7 A0A0P0VDD6 A0A0P0VDD6 A0A0P0VEK6 A0A0P0VEK6 A0A0P0VEN2 A0A0P0VEN2 A0A0P0VEP5 A0A0P0VEP5 A0A0P0VIZ4 A0A0P0VIZ4 A0A0P0VJK6 A0A0P0VJK6 A0A0P0VP35 A0A0P0VP35 A0A0P0VPC8 A0A0P0VPC8 A0A0P0WB93 A0A0P0WB93 A0A0P0WIH1 A0A0P0WIH1 A0A0P0WSW9 A0A0P0WSW9 A0A0P0WTW6 A0A0P0WTW6 A0A0P0XE29 A0A0P0XE29 A0A0P0Y2V6 A0A0P0Y2V6 B7ERU0_ORYSJ B7ERU0_ORYSJ Q0D7W8_ORYSJ Q0D7W8_ORYSJ Q0D7W9_ORYSJ Q0D7W9_ORYSJ OsJ_17170 OsJ_17170 Q0E3Z8_ORYSJ Q0E3Z8_ORYSJ Q0IWN2_ORYSJ Q0IWN2_ORYSJ OsJ_01157 OsJ_01157 Q8H4L0_ORYSJ Q8H4L0_ORYSJ Q851A3_ORYSJ Q851A3_ORYSJ Q84YS0_ORYSJ Q84YS0_ORYSJ Q7XZG6_ORYSJ Q7XZG6_ORYSJ Q7XU07_ORYSJ Q7XU07_ORYSJ Q7XQI1_ORYSJ Q7XQI1_ORYSJ Q7XM15_ORYSJ Q7XM15_ORYSJ DIM1 DIM1 Q7G608_ORYSJ Q7G608_ORYSJ Q7EYN1_ORYSJ Q7EYN1_ORYSJ Q75LD6_ORYSJ Q75LD6_ORYSJ Q75K32_ORYSJ Q75K32_ORYSJ Q6Z8Q6_ORYSJ Q6Z8Q6_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YTU8_ORYSJcDNA clone:J033051L15, full insert sequence. (438 aa)
Q6K8R4_ORYSJcDNA clone:J013052G16, full insert sequence. (418 aa)
Q6K7Q7_ORYSJOs02g0827300 protein. (582 aa)
Q6K2E9_ORYSJcDNA clone:001-016-D10, full insert sequence. (101 aa)
Q6EUD5_ORYSJOs02g0245000 protein. (792 aa)
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q69V60_ORYSJcDNA clone:J033113H11, full insert sequence. (997 aa)
Q69IN4_ORYSJcDNA clone:J013129L11, full insert sequence. (375 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
Q53MQ0_ORYSJThioredoxin-like protein 4B, putative, expressed. (152 aa)
Q33BE1_ORYSJTransposon protein, putative, CACTA, En/Spm sub-class, expressed. (463 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
Q10R21_ORYSJRNA recognition motif family protein, expressed. (416 aa)
Q10Q44_ORYSJPre-mRNA processing protein prp39, putative, expressed. (789 aa)
Q10Q04_ORYSJOs03g0214900 protein. (979 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q10PA5_ORYSJRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
Q10NP6_ORYSJSplicing factor 3A subunit 2, putative, expressed. (321 aa)
OsJ_10509U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing. (232 aa)
Q10LA2_ORYSJU4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed. (524 aa)
OJ1111_B11.10Zinc finger CCCH domain-containing protein 25. (312 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0J7Y5_ORYSJSm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
Q0JDN9_ORYSJcDNA clone:001-112-E09, full insert sequence. (97 aa)
A0A0N7KHW2Os03g0701100 protein. (318 aa)
A0A0N7KQF0Os09g0249600 protein. (480 aa)
A0A0P0V1B4Os01g0263600 protein. (737 aa)
A0A0P0V3J7Os01g0532200 protein. (467 aa)
A0A0P0VDD6Small nuclear ribonucleoprotein Sm D2. (103 aa)
A0A0P0VEK6Os02g0142300 protein. (128 aa)
A0A0P0VEN2Os02g0137400 protein. (858 aa)
A0A0P0VEP5Os02g0147300 protein. (185 aa)
A0A0P0VIZ4Os02g0478900 protein. (927 aa)
A0A0P0VJK6Os02g0511500 protein. (348 aa)
A0A0P0VP35Os02g0730200 protein. (146 aa)
A0A0P0VPC8Os02g0730100 protein. (147 aa)
A0A0P0WB93Os04g0470150 protein. (76 aa)
A0A0P0WIH1Os05g0163250 protein. (559 aa)
A0A0P0WSW9Os06g0167000 protein. (1130 aa)
A0A0P0WTW6Os06g0214550 protein. (222 aa)
A0A0P0XE29Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
A0A0P0Y2V6Os11g0495400 protein. (131 aa)
B7ERU0_ORYSJcDNA clone:J033042L23, full insert sequence. (427 aa)
Q0D7W8_ORYSJOs07g0203800 protein. (281 aa)
Q0D7W9_ORYSJOs07g0203700 protein. (666 aa)
OsJ_17170U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing. (253 aa)
Q0E3Z8_ORYSJOs02g0146400 protein. (358 aa)
Q0IWN2_ORYSJOs10g0498600 protein. (428 aa)
OsJ_01157Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
Q8H4L0_ORYSJOs07g0141600 protein. (484 aa)
Q851A3_ORYSJcDNA clone:006-207-E08, full insert sequence. (202 aa)
Q84YS0_ORYSJcDNA clone:001-116-B04, full insert sequence. (348 aa)
Q7XZG6_ORYSJPre-mRNA branch site p14, putative, expressed. (130 aa)
Q7XU07_ORYSJcDNA clone:J013052N06, full insert sequence. (484 aa)
Q7XQI1_ORYSJOs04g0496400 protein. (476 aa)
Q7XM15_ORYSJcDNA, clone: J075162F09, full insert sequence. (110 aa)
DIM1Thioredoxin-like protein 4A, putative, expressed. (142 aa)
Q7G608_ORYSJRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
Q7EYN1_ORYSJOs08g0379000 protein. (1161 aa)
Q75LD6_ORYSJRNA-binding protein Luc7-like 2, putative, expressed. (329 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6Z8Q6_ORYSJSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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