STRINGSTRING
A0A0P0XVH2 A0A0P0XVH2 Q10PA9_ORYSJ Q10PA9_ORYSJ Q8RZK0_ORYSJ Q8RZK0_ORYSJ A0A0P0VD95 A0A0P0VD95 Q10B15_ORYSJ Q10B15_ORYSJ A0A0P0VST4 A0A0P0VST4 Q7EYN1_ORYSJ Q7EYN1_ORYSJ Q6ZCC0_ORYSJ Q6ZCC0_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6L5D9_ORYSJ Q6L5D9_ORYSJ Q6ETX3_ORYSJ Q6ETX3_ORYSJ Q5JJU2_ORYSJ Q5JJU2_ORYSJ U2AF65A U2AF65A U2AF65B U2AF65B Q10Q44_ORYSJ Q10Q44_ORYSJ A3AYP1_ORYSJ A3AYP1_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0P0XVH2Os10g0483700 protein. (152 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q8RZK0_ORYSJcDNA clone:001-113-F12, full insert sequence. (279 aa)
A0A0P0VD95Os01g0961300 protein. (151 aa)
Q10B15_ORYSJcDNA clone:002-149-C11, full insert sequence. (574 aa)
A0A0P0VST4Os03g0138100 protein. (643 aa)
Q7EYN1_ORYSJOs08g0379000 protein. (1161 aa)
Q6ZCC0_ORYSJOs08g0113200 protein. (838 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6L5D9_ORYSJOs05g0581900 protein. (281 aa)
Q6ETX3_ORYSJU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
Q5JJU2_ORYSJcDNA clone:J033112L14, full insert sequence. (608 aa)
U2AF65ASplicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA. (574 aa)
U2AF65BSplicing factor U2af large subunit B; Necessary for the splicing of pre-mRNA. (548 aa)
Q10Q44_ORYSJPre-mRNA processing protein prp39, putative, expressed. (789 aa)
A3AYP1_ORYSJOs04g0679400 protein. (258 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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