STRINGSTRING
SPT16 SPT16 OsJ_30723 OsJ_30723 Q8LHK9_ORYSJ Q8LHK9_ORYSJ Q8LJL5_ORYSJ Q8LJL5_ORYSJ Q9AXB2_ORYSJ Q9AXB2_ORYSJ SSRP1-A SSRP1-A Q8H9E4_ORYSJ Q8H9E4_ORYSJ A0A0N7KI28 A0A0N7KI28 A0A0N7KM73 A0A0N7KM73 A0A0N7KS24 A0A0N7KS24 A0A0P0V8S9 A0A0P0V8S9 A0A0P0VPZ7 A0A0P0VPZ7 A0A0P0VS40 A0A0P0VS40 A0A0P0WAY1 A0A0P0WAY1 A0A0P0WIR8 A0A0P0WIR8 A0A0P0WS85 A0A0P0WS85 A0A0P0WWJ7 A0A0P0WWJ7 A0A0P0X1M5 A0A0P0X1M5 A0A0P0XGE1 A0A0P0XGE1 A0A0P0XPQ0 A0A0P0XPQ0 A0A0P0XQG2 A0A0P0XQG2 A0A0P0XW57 A0A0P0XW57 A3AXX0_ORYSJ A3AXX0_ORYSJ C7J286_ORYSJ C7J286_ORYSJ C7J5J3_ORYSJ C7J5J3_ORYSJ Q0D412_ORYSJ Q0D412_ORYSJ Q0D934_ORYSJ Q0D934_ORYSJ C3H20_ORYSJ C3H20_ORYSJ CYCT1-1 CYCT1-1 Q0IMW0_ORYSJ Q0IMW0_ORYSJ Q0ITS2_ORYSJ Q0ITS2_ORYSJ Q0J7R4_ORYSJ Q0J7R4_ORYSJ Q10P71_ORYSJ Q10P71_ORYSJ Q2QN51_ORYSJ Q2QN51_ORYSJ CYCT1-1-2 CYCT1-1-2 Q2QRX9_ORYSJ Q2QRX9_ORYSJ Q2R037_ORYSJ Q2R037_ORYSJ CYCT1-3 CYCT1-3 LAX14_ORYSJ LAX14_ORYSJ Q53NW5_ORYSJ Q53NW5_ORYSJ Q53P12_ORYSJ Q53P12_ORYSJ OsJ_04119 OsJ_04119 SSRP1-B SSRP1-B LAX12_ORYSJ LAX12_ORYSJ Q69JW8_ORYSJ Q69JW8_ORYSJ Q69T55_ORYSJ Q69T55_ORYSJ Q6K246_ORYSJ Q6K246_ORYSJ CYCT1_2 CYCT1_2 Q6ZD92_ORYSJ Q6ZD92_ORYSJ Q75GC3_ORYSJ Q75GC3_ORYSJ Q75M18_ORYSJ Q75M18_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPT16FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (1056 aa)
OsJ_30723Auxin transporter-like protein 3; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily. (547 aa)
Q8LHK9_ORYSJTranscription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (131 aa)
Q8LJL5_ORYSJcDNA clone:001-022-E12, full insert sequence. (319 aa)
Q9AXB2_ORYSJcDNA clone:J013038F15, full insert sequence. (646 aa)
SSRP1-AFACT complex subunit SSRP1-A; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (641 aa)
Q8H9E4_ORYSJPutative TPR-containing nuclear phosphoprotein. (1069 aa)
A0A0N7KI28Os03g0756500 protein. (416 aa)
A0A0N7KM73Os06g0523100 protein. (496 aa)
A0A0N7KS24Os10g0511800 protein. (216 aa)
A0A0P0V8S9Os01g0775100 protein. (793 aa)
A0A0P0VPZ7Os02g0772000 protein. (346 aa)
A0A0P0VS40Os03g0112600 protein. (395 aa)
A0A0P0WAY1Os04g0458200 protein. (659 aa)
A0A0P0WIR8Os05g0183400 protein. (326 aa)
A0A0P0WS85Os06g0115950 protein. (147 aa)
A0A0P0WWJ7Os06g0472700 protein. (499 aa)
A0A0P0X1M5Os06g0731700 protein. (349 aa)
A0A0P0XGE1Os08g0404350 protein. (220 aa)
A0A0P0XPQ0Os09g0530600 protein. (95 aa)
A0A0P0XQG2Os09g0530500 protein. (445 aa)
A0A0P0XW57Os10g0511900 protein. (456 aa)
A3AXX0_ORYSJOs04g0640900 protein. (637 aa)
C7J286_ORYSJOs05g0506200 protein. (586 aa)
C7J5J3_ORYSJOs08g0404400 protein. (307 aa)
Q0D412_ORYSJOs07g0655500 protein. (1447 aa)
Q0D934_ORYSJOs07g0109600 protein. (476 aa)
C3H20_ORYSJZinc finger CCCH domain-containing protein 20. (707 aa)
CYCT1-1Cyclin-T1-1; Belongs to the cyclin family. Cyclin T subfamily. (446 aa)
Q0IMW0_ORYSJOs12g0535900 protein. (599 aa)
Q0ITS2_ORYSJOs11g0223400 protein. (406 aa)
Q0J7R4_ORYSJOs08g0169600 protein. (104 aa)
Q10P71_ORYSJcDNA clone:J033131K12, full insert sequence. (524 aa)
Q2QN51_ORYSJcDNA clone:002-108-C04, full insert sequence. (663 aa)
CYCT1-1-2Cyclin-T1-4; Belongs to the cyclin family. Cyclin T subfamily. (543 aa)
Q2QRX9_ORYSJMetallopeptidase family M24 containing protein, expressed. (1069 aa)
Q2R037_ORYSJOs11g0660300 protein. (323 aa)
CYCT1-3Cyclin-T1-3; Belongs to the cyclin family. Cyclin T subfamily. (490 aa)
LAX14_ORYSJPutative auxin transporter-like protein 4; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily. (480 aa)
Q53NW5_ORYSJSkp1 family, tetramerisation domain containing protein, expressed; Belongs to the SKP1 family. (124 aa)
Q53P12_ORYSJcDNA clone:J023120N10, full insert sequence. (492 aa)
OsJ_04119Auxin transporter-like protein 1; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity). (492 aa)
SSRP1-BFACT complex subunit SSRP1-B; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (640 aa)
LAX12_ORYSJAuxin transporter-like protein 2; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily. (482 aa)
Q69JW8_ORYSJcDNA clone:001-202-D10, full insert sequence. (655 aa)
Q69T55_ORYSJOs06g0208300 protein. (291 aa)
Q6K246_ORYSJOs02g0259100 protein. (631 aa)
CYCT1_2Cyclin-T1-2. (630 aa)
Q6ZD92_ORYSJOs08g0157100 protein. (451 aa)
Q75GC3_ORYSJRNA pol II accessory factor, Cdc73 family protein, expressed. (375 aa)
Q75M18_ORYSJMethionine S-methyltransferase. (1084 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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