STRINGSTRING
Q6ZL18_ORYSJ Q6ZL18_ORYSJ OsJ_30723 OsJ_30723 Q7XKD9_ORYSJ Q7XKD9_ORYSJ A0A0P0VC65 A0A0P0VC65 A0A0P0VI47 A0A0P0VI47 B9FMY7_ORYSJ B9FMY7_ORYSJ CDKD-1 CDKD-1 Q0D412_ORYSJ Q0D412_ORYSJ CYCT1-1 CYCT1-1 Q0JK78_ORYSJ Q0JK78_ORYSJ A0A0N7KJC3 A0A0N7KJC3 CYCH1-1 CYCH1-1 Q10P71_ORYSJ Q10P71_ORYSJ CYCT1-1-2 CYCT1-1-2 Q2R4I6_ORYSJ Q2R4I6_ORYSJ CYCT1-3 CYCT1-3 LAX14_ORYSJ LAX14_ORYSJ OsJ_04119 OsJ_04119 Q5SNL8_ORYSJ Q5SNL8_ORYSJ CDKF-1 CDKF-1 Q65X21_ORYSJ Q65X21_ORYSJ LAX12_ORYSJ LAX12_ORYSJ Q69P44_ORYSJ Q69P44_ORYSJ Q6Z2N2_ORYSJ Q6Z2N2_ORYSJ CYCT1_2 CYCT1_2 Q6ZC85_ORYSJ Q6ZC85_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q6ZL18_ORYSJcDNA clone:J033072E11, full insert sequence. (131 aa)
OsJ_30723Auxin transporter-like protein 3; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily. (547 aa)
Q7XKD9_ORYSJRNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
A0A0P0VC65Os01g0925700 protein. (371 aa)
A0A0P0VI47Os02g0304500 protein. (521 aa)
B9FMY7_ORYSJOs05g0198700 protein. (81 aa)
CDKD-1Cyclin-dependent kinase D-1; CDK-activating kinase that may control G1/S phase progression. May control the rate of cell differentiation to accomplish proper development of organs, or in response to a changing environment. Forms a complex with cyclin CYCH1-1 that phosphorylates CDKA-1 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II. (424 aa)
Q0D412_ORYSJOs07g0655500 protein. (1447 aa)
CYCT1-1Cyclin-T1-1; Belongs to the cyclin family. Cyclin T subfamily. (446 aa)
Q0JK78_ORYSJOs01g0691600 protein. (580 aa)
A0A0N7KJC3General transcription factor IIH subunit. (495 aa)
CYCH1-1Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. (330 aa)
Q10P71_ORYSJcDNA clone:J033131K12, full insert sequence. (524 aa)
CYCT1-1-2Cyclin-T1-4; Belongs to the cyclin family. Cyclin T subfamily. (543 aa)
Q2R4I6_ORYSJCDK-activating kinase assembly factor MAT1 family protein, expressed. (195 aa)
CYCT1-3Cyclin-T1-3; Belongs to the cyclin family. Cyclin T subfamily. (490 aa)
LAX14_ORYSJPutative auxin transporter-like protein 4; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily. (480 aa)
OsJ_04119Auxin transporter-like protein 1; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity). (492 aa)
Q5SNL8_ORYSJcDNA clone:J033143J20, full insert sequence. (195 aa)
CDKF-1Cyclin-dependent kinase F-1; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (479 aa)
Q65X21_ORYSJOs05g0108500 protein. (65 aa)
LAX12_ORYSJAuxin transporter-like protein 2; Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily. (482 aa)
Q69P44_ORYSJOs09g0423300 protein. (962 aa)
Q6Z2N2_ORYSJcDNA clone:J033106M17, full insert sequence. (289 aa)
CYCT1_2Cyclin-T1-2. (630 aa)
Q6ZC85_ORYSJcDNA clone:J013129O14, full insert sequence. (604 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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