STRINGSTRING
Q84SZ4_ORYSJ Q84SZ4_ORYSJ A0A0P0WN72 A0A0P0WN72 A0A0P0WNF9 A0A0P0WNF9 A0A0P0WTA4 A0A0P0WTA4 A0A0P0WUM7 A0A0P0WUM7 A0A0P0XDY7 A0A0P0XDY7 A0A0P0XFH2 A0A0P0XFH2 A0A0P0XQL1 A0A0P0XQL1 A0A0P0XRT5 A0A0P0XRT5 H2B1 H2B1 NFYC2 NFYC2 B9EW84_ORYSJ B9EW84_ORYSJ B9G1J0_ORYSJ B9G1J0_ORYSJ Q0DJB5_ORYSJ Q0DJB5_ORYSJ Q0J0W2_ORYSJ Q0J0W2_ORYSJ HD5 HD5 H3 H3 Q10AH3_ORYSJ Q10AH3_ORYSJ Q10IZ0_ORYSJ Q10IZ0_ORYSJ Q10JT5_ORYSJ Q10JT5_ORYSJ Q2QN90_ORYSJ Q2QN90_ORYSJ H2AXB_ORYSJ H2AXB_ORYSJ H2A7_ORYSJ H2A7_ORYSJ Q2QSW7_ORYSJ Q2QSW7_ORYSJ Q2R2Z2_ORYSJ Q2R2Z2_ORYSJ H3R-11 H3R-11 Q5QMA1_ORYSJ Q5QMA1_ORYSJ NFYB2 NFYB2 OsHAP3D OsHAP3D NFYB3 NFYB3 NFYC4 NFYC4 OsDrAp2 OsDrAp2 NFYB4 NFYB4 NFYB10 NFYB10 H2B.9 H2B.9 OsHAP5A OsHAP5A Q6H7I0_ORYSJ Q6H7I0_ORYSJ OJ1281_H05.14 OJ1281_H05.14 CenH3 CenH3 NFYB1 NFYB1 Q6Z8D5_ORYSJ Q6Z8D5_ORYSJ H2B.2 H2B.2 OsHAP3E OsHAP3E OJ1582_D10.26 OJ1582_D10.26 OJ1582_D10.25 OJ1582_D10.25 NFYB8 NFYB8 OsJ_016124 OsJ_016124 H2B.7 H2B.7 OsHAP5G OsHAP5G Q7XUC9_ORYSJ Q7XUC9_ORYSJ OJ1365_D05.1 OJ1365_D05.1 OJ1663_D06.11 OJ1663_D06.11 A0A0P0W7C1 A0A0P0W7C1 A0A0P0VWU0 A0A0P0VWU0 A0A0P0VT87 A0A0P0VT87 A0A0P0VK27 A0A0P0VK27 A0A0P0VIN6 A0A0P0VIN6 A0A0P0VCF9 A0A0P0VCF9 A0A0P0V310 A0A0P0V310 A0A0N7KPF9 A0A0N7KPF9 A0A0N7KF87 A0A0N7KF87 NFYC6 NFYC6 H2B.10 H2B.10 H2B.8 H2B.8 H2B.6 H2B.6 H2B.3 H2B.3 H2B.4 H2B.4 H2B.5 H2B.5 OsJ_001872 OsJ_001872 H2B.11 H2B.11 OsHAP3D-2 OsHAP3D-2 P0455C04.16 P0455C04.16 HAP5 HAP5 OsJ_31536 OsJ_31536 Q8LRG9_ORYSJ Q8LRG9_ORYSJ Q8LMX6_ORYSJ Q8LMX6_ORYSJ B1377B10.25 B1377B10.25 OJ1607A12.10 OJ1607A12.10 A0A0P0WA36 A0A0P0WA36
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q84SZ4_ORYSJcDNA clone:J013132N21, full insert sequence. (681 aa)
A0A0P0WN72Histone H2B; Belongs to the histone H2B family. (106 aa)
A0A0P0WNF9Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (99 aa)
A0A0P0WTA4Os06g0159725 protein. (132 aa)
A0A0P0WUM7Os06g0250300 protein; Belongs to the histone H2A family. (97 aa)
A0A0P0XDY7Os08g0289266 protein. (111 aa)
A0A0P0XFH2Os08g0383700 protein. (248 aa)
A0A0P0XQL1Os09g0568200 protein. (140 aa)
A0A0P0XRT5Os09g0570850 protein; Belongs to the histone H2B family. (152 aa)
H2B1Histone H2B.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
NFYC2Nuclear transcription factor Y subunit C-2; Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A. Component of the NF-Y/HAP transcription factor complex (By similarity); Belongs to the NFYC/HAP5 subunit family. (246 aa)
B9EW84_ORYSJOs01g0338100 protein. (163 aa)
B9G1J0_ORYSJHistone H2B; Belongs to the histone H2B family. (56 aa)
Q0DJB5_ORYSJcDNA, clone: J075149P12, full insert sequence. (327 aa)
Q0J0W2_ORYSJOs09g0480700 protein. (168 aa)
HD5Nuclear transcription factor Y subunit B-11; Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A. Regulates plant height by promoting cell elongation in the internodes. Component of the NF-Y/HAP transcription factor complex (By similarity); Belongs to the NFYB/HAP3 subunit family. (297 aa)
H3Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
Q10AH3_ORYSJHistone-like transcription factor and archaeal histone family protein, expressed. (303 aa)
Q10IZ0_ORYSJTranscription initiation factor TFIID component TAF4 family protein, expressed. (819 aa)
Q10JT5_ORYSJTranscription initiation factor IID, 31kD subunit family protein, expressed. (224 aa)
Q2QN90_ORYSJBromodomain associated family protein, expressed. (366 aa)
H2AXB_ORYSJProbable histone H2AXb; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post- translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response [...] (138 aa)
H2A7_ORYSJProbable histone H2A.7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
Q2QSW7_ORYSJHistone H3, putative, expressed. (136 aa)
Q2R2Z2_ORYSJHistone-like transcription factor and archaeal histone family protein, expressed. (258 aa)
H3R-11Histone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
Q5QMA1_ORYSJcDNA clone:J013126J05, full insert sequence. (211 aa)
NFYB2Nuclear transcription factor Y subunit B-2; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development; Belongs to the NFYB/HAP3 subunit family. (178 aa)
OsHAP3DcDNA clone:002-141-E08, full insert sequence. (250 aa)
NFYB3Nuclear transcription factor Y subunit B-3; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development; Belongs to the NFYB/HAP3 subunit family. (185 aa)
NFYC4Nuclear transcription factor Y subunit C-4; Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A. Component of the NF-Y/HAP transcription factor complex (By similarity); Belongs to the NFYC/HAP5 subunit family. (250 aa)
OsDrAp2cDNA clone:J013150F08, full insert sequence. (290 aa)
NFYB4Nuclear transcription factor Y subunit B-4; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development; Belongs to the NFYB/HAP3 subunit family. (143 aa)
NFYB10Nuclear transcription factor Y subunit B-10; Component of the NF-Y/HAP transcription factor complex. (224 aa)
H2B.9Histone H2B.9; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (152 aa)
OsHAP5AcDNA, clone: J100067L16, full insert sequence. (259 aa)
Q6H7I0_ORYSJcDNA clone:J023007I15, full insert sequence. (728 aa)
OJ1281_H05.14Probable histone H2A.4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (163 aa)
CenH3Centromeric histone 3. (164 aa)
NFYB1Nuclear transcription factor Y subunit B-1; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. (186 aa)
Q6Z8D5_ORYSJOs02g0699900 protein. (239 aa)
H2B.2Histone H2B.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (150 aa)
OsHAP3EcDNA clone:002-134-B07, full insert sequence. (254 aa)
OJ1582_D10.26Probable histone H2A.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
OJ1582_D10.25Probable histone H2A.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
NFYB8Nuclear transcription factor Y subunit B-8; Component of the NF-Y/HAP transcription factor complex. (219 aa)
OsJ_016124Probable histone H2A.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (156 aa)
H2B.7Histone H2B.7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
OsHAP5GHAP5 subunit of HAP complex. (125 aa)
Q7XUC9_ORYSJHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
OJ1365_D05.1Probable histone H2A variant 3; Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone cod [...] (137 aa)
OJ1663_D06.11Probable histone H2A.3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (134 aa)
A0A0P0W7C1Os04g0212700 protein. (176 aa)
A0A0P0VWU0Os03g0320875 protein. (45 aa)
A0A0P0VT87Os03g0144700 protein; Belongs to the histone H2A family. (377 aa)
A0A0P0VK27Os02g0542100 protein. (92 aa)
A0A0P0VIN6Os02g0457300 protein. (207 aa)
A0A0P0VCF9Os01g0935100 protein. (144 aa)
A0A0P0V310Os01g0502900 protein; Belongs to the histone H2B family. (131 aa)
A0A0N7KPF9Os08g0206500 protein. (282 aa)
A0A0N7KF87Os02g0457100 protein. (149 aa)
NFYC6Nuclear transcription factor Y subunit C-6; Component of the NF-Y/HAP transcription factor complex. (205 aa)
H2B.10Histone H2B.10; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.8Histone H2B.8; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.6Histone H2B.6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.3Histone H2B.3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.4Histone H2B.4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (153 aa)
H2B.5Histone H2B.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (155 aa)
OsJ_001872Probable histone H2A.5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (159 aa)
H2B.11Histone H2B.11; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (139 aa)
OsHAP3D-2HAP3 subunit of HAP complex. (177 aa)
P0455C04.16cDNA, clone: J075175B02, full insert sequence. (421 aa)
HAP5Transcription binding factor. (442 aa)
OsJ_31536Probable histone H2A variant 2; Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone cod [...] (139 aa)
Q8LRG9_ORYSJcDNA clone:J023036C23, full insert sequence. (541 aa)
Q8LMX6_ORYSJHistone-like transcription factor and archaeal histone family protein, expressed. (335 aa)
B1377B10.25Probable histone H2AXa; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post- translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response [...] (137 aa)
OJ1607A12.10Probable histone H2A variant 1; Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone cod [...] (138 aa)
A0A0P0WA36Os04g0397700 protein. (142 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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