STRINGSTRING
Q6H5U8_ORYSJ Q6H5U8_ORYSJ A0A0P0UXU4 A0A0P0UXU4 A0A0P0W309 A0A0P0W309 A0A0P0WCN4 A0A0P0WCN4 A0A0P0XJV4 A0A0P0XJV4 DCL4 DCL4 DRB5 DRB5 B7F972_ORYSJ B7F972_ORYSJ DRB3 DRB3 DRB2 DRB2 DRB8 DRB8 DRB7 DRB7 DCL2A DCL2A DRB1 DRB1 OsJ_21299 OsJ_21299 DCL2B DCL2B OJ1653_D06.9 OJ1653_D06.9 DRB4 DRB4 DCL1 DCL1 DRB6 DRB6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q6H5U8_ORYSJcDNA clone:J013105C11, full insert sequence. (940 aa)
A0A0P0UXU4Os01g0118100 protein. (818 aa)
A0A0P0W309Os03g0748800 protein. (1150 aa)
A0A0P0WCN4Os04g0529500 protein. (933 aa)
A0A0P0XJV4Os09g0315050 protein. (143 aa)
DCL4Endoribonuclease Dicer homolog 4; Involved in the RNA silencing pathway. Cleaves double- stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. Ma [...] (1657 aa)
DRB5Double-stranded RNA-binding protein 5; Binds double-stranded RNA. (404 aa)
B7F972_ORYSJcDNA, clone: J075104N21, full insert sequence. (180 aa)
DRB3Double-stranded RNA-binding protein 3; Binds double-stranded RNA. (437 aa)
DRB2Double-stranded RNA-binding protein 2; Binds double-stranded RNA. (593 aa)
DRB8Double-stranded RNA-binding protein 8; Binds double-stranded RNA. (424 aa)
DRB7Double-stranded RNA-binding protein 7; Binds double-stranded RNA. (473 aa)
DCL2AEndoribonuclease Dicer homolog 2a; Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs (By similarity). Belongs to the helicase family. Dicer subfamily. (1410 aa)
DRB1Double-stranded RNA-binding protein 1; Binds double-stranded RNA. (441 aa)
OsJ_21299Ribonuclease 3-like protein 3; Cleaves double-stranded RNA (dsRNA). (299 aa)
DCL2BEndoribonuclease Dicer homolog 2b; Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs (By similarity). Belongs to the helicase family. Dicer subfamily. (1377 aa)
OJ1653_D06.9Ribonuclease 3-like protein 2; Cleaves double-stranded RNA (dsRNA). (317 aa)
DRB4Double-stranded RNA-binding protein 4; Binds double-stranded RNA. (312 aa)
DCL1Endoribonuclease Dicer homolog 1; Involved in the RNA silencing pathway. Cleaves double- stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. (1883 aa)
DRB6Double-stranded RNA-binding protein 6; Binds double-stranded RNA. (514 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.