STRINGSTRING
A0A0P0WHV3 A0A0P0WHV3 A0A0N7KUE2 A0A0N7KUE2 A0A0P0WNT7 A0A0P0WNT7 A0A0P0XAV3 A0A0P0XAV3 A0A0P0XB16 A0A0P0XB16 A0A0P0Y2X9 A0A0P0Y2X9 B7EHL9_ORYSJ B7EHL9_ORYSJ PARP3 PARP3 Q10ML5_ORYSJ Q10ML5_ORYSJ Q2QUW8_ORYSJ Q2QUW8_ORYSJ RFC1 RFC1 Q5JLP9_ORYSJ Q5JLP9_ORYSJ xrcc1 xrcc1 Q654Y6_ORYSJ Q654Y6_ORYSJ POLL POLL Q69P85_ORYSJ Q69P85_ORYSJ Q6ATS1_ORYSJ Q6ATS1_ORYSJ Q6AUP5_ORYSJ Q6AUP5_ORYSJ Q75KI1_ORYSJ Q75KI1_ORYSJ PARP1 PARP1 LIG4 LIG4 NBS1 NBS1 Q7XPZ2_ORYSJ Q7XPZ2_ORYSJ PES PES
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0P0WHV3Os05g0147133 protein. (821 aa)
A0A0N7KUE2Os12g0624500 protein. (705 aa)
A0A0P0WNT7Os05g0486600 protein. (558 aa)
A0A0P0XAV3Os07g0690100 protein. (146 aa)
A0A0P0XB16Os07g0689950 protein. (1005 aa)
A0A0P0Y2X9Os11g0521900 protein. (1226 aa)
B7EHL9_ORYSJcDNA clone:J023047F24, full insert sequence. (901 aa)
PARP3Protein ADP-ribosyltransferase PARP3; Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). (831 aa)
Q10ML5_ORYSJBRCA1 C Terminus domain containing protein, expressed. (1462 aa)
Q2QUW8_ORYSJcDNA clone:002-184-D06, full insert sequence. (225 aa)
RFC1Replication factor C subunit 1; May be involved in DNA replication and thus regulate cell proliferation. (1021 aa)
Q5JLP9_ORYSJcDNA clone:J033024C23, full insert sequence. (671 aa)
xrcc1X-ray repair cross complementing protein 1. (347 aa)
Q654Y6_ORYSJDNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1125 aa)
POLLDNA polymerase lambda; Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Has both DNA polymerase and terminal transferase activities. Has a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (549 aa)
Q69P85_ORYSJOs09g0440200 protein. (548 aa)
Q6ATS1_ORYSJBRCA1 C Terminus domain containing protein, expressed. (883 aa)
Q6AUP5_ORYSJcDNA clone:J033014F21, full insert sequence. (612 aa)
Q75KI1_ORYSJRNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (536 aa)
PARP1Poly [ADP-ribose] polymerase 1; Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). (977 aa)
LIG4Putative DNA ligase 4. (1322 aa)
NBS1Nijmegen breakage syndrome 1 protein; Component of the MRE11-RAD50-NBN complex (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex may be involved in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, and cell cycle checkpoint control. Functions also in the very early stages of meiosis. (560 aa)
Q7XPZ2_ORYSJcDNA clone:J033122C24, full insert sequence. (629 aa)
PESPescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (604 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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