STRINGSTRING
STAR3 STAR3 PCF8 PCF8 MED17 MED17 DREB2E DREB2E MADS1 MADS1 EIL1A EIL1A GATA18 GATA18 PIL13 PIL13 PCF6 PCF6 DREB2A DREB2A GAMYB GAMYB BZIP12 BZIP12 Q0JGJ6_ORYSJ Q0JGJ6_ORYSJ IRO2 IRO2 FL FL DREB1J DREB1J DREB1I DREB1I DREB1H DREB1H MED10 MED10 GATA19 GATA19 MADS18 MADS18 VP1 VP1 PCF1 PCF1 RR31 RR31 EHD2 EHD2 LF LF A0A0P0WN18 A0A0P0WN18 A0A0N7KP87 A0A0N7KP87 SMOS1 SMOS1 MADS50 MADS50 HACL3_ORYSJ HACL3_ORYSJ DREB1C DREB1C GRF9 GRF9 MADS16 MADS16 EIL1B EIL1B EIL2 EIL2 TBP2-2 TBP2-2 DREB1F DREB1F PCF5 PCF5 PCF7 PCF7 Q8LIZ3_ORYSJ Q8LIZ3_ORYSJ OJ1339_F05.128 OJ1339_F05.128 MYBS1 MYBS1 RR21 RR21 DREB1E DREB1E DREB2C DREB2C EHD1 EHD1 RR29 RR29 RR42 RR42 Q7XM27_ORYSJ Q7XM27_ORYSJ RR28 RR28 Q7XIE0_ORYSJ Q7XIE0_ORYSJ HSFB4B HSFB4B CBT CBT MYBS2 MYBS2 TGA2.1 TGA2.1 NAC048 NAC048 RR41 RR41 RR27 RR27 NAC002 NAC002 RISBZ1 RISBZ1 GRF4 GRF4 TRAB1 TRAB1 RR32 RR32 RR33 RR33 PCF2 PCF2 HOX5 HOX5 GATA17 GATA17 HACL1_ORYSJ HACL1_ORYSJ MED11 MED11 KIN4A KIN4A Q6YTR0_ORYSJ Q6YTR0_ORYSJ RF2b RF2b RR23 RR23 EREBP1 EREBP1 HOX4 HOX4 DREB1D DREB1D WRKY24 WRKY24 RR24 RR24 Q6H635_ORYSJ Q6H635_ORYSJ HSFA2E HSFA2E Q6F2Z7_ORYSJ Q6F2Z7_ORYSJ MADS6 MADS6 GRF10 GRF10 DREB1G DREB1G Q6ENK5_ORYSJ Q6ENK5_ORYSJ GRF1 GRF1 GRF2 GRF2 GRF3 GRF3 GRF5 GRF5 GRF6 GRF6 GRF7 GRF7 GRF8 GRF8 GRF11 GRF11 GRF12 GRF12 GIF1 GIF1 RF2a RF2a TAF1 TAF1 RR25 RR25 MED20 MED20 NFYB4 NFYB4 DREB2D DREB2D APO1 APO1 MED4 MED4 DREB1A DREB1A NFYB3 NFYB3 P0018H04.4 P0018H04.4 LIC LIC GATA20 GATA20 DREB2B DREB2B Q5W6G3_ORYSJ Q5W6G3_ORYSJ ORC1 ORC1 RR22 RR22 NFYB2 NFYB2 RR26 RR26 PCF3 PCF3 NAC071 NAC071 MADS3 MADS3 MADS4 MADS4 MADS2 MADS2 DREB1B DREB1B GCN5 GCN5 HSFA2C HSFA2C Q336R8_ORYSJ Q336R8_ORYSJ MYC2 MYC2 MADS58 MADS58 NAC45 NAC45
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proteins of unknown 3D structure
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STAR3Zinc finger protein STAR3; Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. (465 aa)
PCF8Transcription factor PCF8; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3'. (297 aa)
MED17Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (655 aa)
DREB2EDehydration-responsive element-binding protein 2E; Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). (318 aa)
MADS1MADS-box transcription factor 1; Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8. (257 aa)
EIL1AProtein ETHYLENE-INSENSITIVE 3-like 1a; Transcription factor acting as a positive regulator in the ethylene response pathway. Required for the inhibition of root growth by ethylene in etiolated seedlings. Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression. Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal inf [...] (641 aa)
GATA18GATA transcription factor 18; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. (319 aa)
PIL13Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13; Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress. Belongs to the bHLH protein family. (410 aa)
PCF6Transcription factor PCF6; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3'. (357 aa)
DREB2ADehydration-responsive element-binding protein 2A; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. (274 aa)
GAMYBTranscription factor GAMYB; Transcriptional activator of gibberellin-dependent alpha- amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. Required for anther development. Functions in parallel with UDT1 to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription. Required for pollen development. Probably required for controlling tapetal cell size and promoting tapetal programmed cell death (PCD) during anther develop [...] (553 aa)
BZIP12bZIP transcription factor 12; Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling. Involved in the signaling pathway that induces growth inhibition in response to D- allose. (266 aa)
Q0JGJ6_ORYSJTranscription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (113 aa)
IRO2Protein IRON-RELATED TRANSCRIPTION FACTOR 2; Transcription activator that binds to the DNA motif 5'- CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron a [...] (247 aa)
FLProbable transcription factor FL; Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1. Promotes flowering ; Belongs to the FLO/LFY family. (389 aa)
DREB1JDehydration-responsive element-binding protein 1J; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (242 aa)
DREB1IDehydration-responsive element-binding protein 1I; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (251 aa)
DREB1HDehydration-responsive element-binding protein 1H; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (246 aa)
MED10Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (190 aa)
GATA19GATA transcription factor 19; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. (271 aa)
MADS18MADS-box transcription factor 18; Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. (249 aa)
VP1B3 domain-containing protein VP1; Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. (727 aa)
PCF1Transcription factor PCF1; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'- GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. (183 aa)
RR31Two-component response regulator ORR31; Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (485 aa)
EHD2Protein EARLY HEADING DATE 2; Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock. Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1. Seems to repress FTL11 expression. May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters. (475 aa)
LFTranscription factor LATE FLOWERING; Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. Belongs to the bHLH protein family. (416 aa)
A0A0P0WN18Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (584 aa)
A0A0N7KP87Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (68 aa)
SMOS1AP2-like ethylene-responsive transcription factor SMOS1; Transcription activator involved in the control of organ size. Acts as an auxin-dependent regulator for cell expansion during organ size control. Binds to the promoter of PHI-1, a gene that regulates cell expansion, and positively regulates its expression. Cooperatively functions in a transactivating complex with DLT to enhance the transcription of the SMOS1 target PHI-1, and to regulate plant organ size. Interaction between SMOS1 and DLT is a crosstalk point for auxin and brassinosteroid (BR) signaling. Acts as positive regulato [...] (425 aa)
MADS50MADS-box transcription factor 50; Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. (230 aa)
HACL3_ORYSJProbable histone acetyltransferase HAC-like 3; Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. (1276 aa)
DREB1CDehydration-responsive element-binding protein 1C; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (214 aa)
GRF9Growth-regulating factor 9; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (426 aa)
MADS16MADS-box transcription factor 16; Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. (224 aa)
EIL1BProtein ETHYLENE-INSENSITIVE 3-like 1b; Transcription factor acting as a positive regulator in the ethylene response pathway. Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes. Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling. Belongs to the EIN3 family. (644 aa)
EIL2Protein ETHYLENE-INSENSITIVE 3-like 2; Transcription factor acting as a positive regulator in the ethylene response pathway. Involved in wound signaling by binding specifically to the DNA sequence 5'- ATGTACCT-3' found in the promoter of some wound-inducible genes. Required for ethylene-promoted coleoptile elongation. Acts as negative regulator of salt tolerance. During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity. Possesses transactivation activity in protoplasts. (593 aa)
TBP2-2TATA-binding protein 2; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). (203 aa)
DREB1FDehydration-responsive element-binding protein 1F; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (219 aa)
PCF5Transcription factor PCF5; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3'. (458 aa)
PCF7Transcription factor PCF7; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3'. (457 aa)
Q8LIZ3_ORYSJGATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily. (387 aa)
OJ1339_F05.128Putative MYST-like histone acetyltransferase 1; Histone acetyltransferase which may be involved in transcriptional activation; Belongs to the MYST (SAS/MOZ) family. (450 aa)
MYBS1Transcription factor MYBS1; Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are [...] (306 aa)
RR21Two-component response regulator ORR21; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (691 aa)
DREB1EDehydration-responsive element-binding protein 1E; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (219 aa)
DREB2CDehydration-responsive element-binding protein 2C; Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). (230 aa)
EHD1Two-component response regulator ORR30; Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates HD3A and other FT- like genes independently from HD1. May also activate MADS-box transcription factors involved in flowering regulation. Functions as a response regulator involved in His- to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response [...] (341 aa)
RR29Two-component response regulator ORR29; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins ; Belongs to the ARR family. Type-B subfamily. (390 aa)
RR42Two-component response regulator ORR42; Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-C subfamily. (132 aa)
Q7XM27_ORYSJMediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. (176 aa)
RR28Two-component response regulator ORR28; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (380 aa)
Q7XIE0_ORYSJMediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (202 aa)
HSFB4BHeat stress transcription factor B-4b; Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). (310 aa)
CBTCalmodulin-binding transcription activator CBT; Transcription activator that binds calmodulin in a calcium- dependent manner in vitro. Binds to the DNA consensus sequence 5'- T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. (927 aa)
MYBS2Transcription factor MYBS2; Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. (265 aa)
TGA2.1Transcription factor TGA2.1; Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro. Acts as transcriptional activator when bound to NPR1/NH1 in vitro. Binds to the promoter sequence of CRK10 in vitro. Belongs to the bZIP family. (334 aa)
NAC048NAC domain-containing protein 48; Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus. Transcription activator involved tolerance to cold and salt stresses. Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione reloca [...] (303 aa)
RR41Two-component response regulator ORR41; Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. (127 aa)
RR27Two-component response regulator ORR27; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (620 aa)
NAC002NAC domain-containing protein 2; Transcription factor that possesses transactivation activity. Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes. (316 aa)
RISBZ1bZIP transcription factor RISBZ1; Transcriptional activator that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. Involved in the endosperm-specific regulation of storage protein genes. Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin, globulin and the allergen RAG1. Functions synergistically with DOF3/RPBF to positively regulate quantitatively many seed storage protein genes. Functions synergistically with DOF3/RPBF to positively regulate some metabolic enzymes, such as alanine aminotransferase [...] (436 aa)
GRF4Growth-regulating factor 4; Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences. Transcription activator that plays a regulatory role in grain development. Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width. Positively regulates the expression of genes promoting cell proliferation. Activates the expression of expansin genes to promote cell expansion and grain size. May promote grain size by activating brassinosteroid responses. Component of a network f [...] (394 aa)
TRAB1bZIP transcription factor TRAB1; Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. (374 aa)
RR32Two-component response regulator ORR32; Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (481 aa)
RR33Two-component response regulator ORR33; Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (614 aa)
PCF2Transcription factor PCF2; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'- GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. (373 aa)
HOX5Homeobox-leucine zipper protein HOX5; Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'; Belongs to the HD-ZIP homeobox family. Class I subfamily. (349 aa)
GATA17GATA transcription factor 17; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. (328 aa)
HACL1_ORYSJProbable histone acetyltransferase HAC-like 1; Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. (1668 aa)
MED11Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (115 aa)
KIN4AKinesin-like protein KIN-4A; Microtubule-dependent motor protein involved in the control of the oriented deposition of cellulose microfibrils. Involved in wall biogenesis and modification, and contributes to cell-cycle progression and cell division. Acts as a transcriptional activator in gibberellic acid (GA) biosynthesis pathway. Binds specifically to the DNA sequence 5'-ACCAACTTGAA-3' of the ent-kaurene oxidase 2 (CYP701A6 or OsKO2) promoter. May regulate CYP701A6 gene expression and mediates cell elongation by regulating the GA biosynthesis pathway. (1035 aa)
Q6YTR0_ORYSJMediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (441 aa)
RF2bTranscription factor RF2b; Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication; Belongs to the bZIP family. (329 aa)
RR23Two-component response regulator ORR23; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (688 aa)
EREBP1Ethylene-responsive transcription factor 1; Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'- AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. (365 aa)
HOX4Homeobox-leucine zipper protein HOX4; Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. (277 aa)
DREB1DDehydration-responsive element-binding protein 1D; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). (253 aa)
WRKY24WRKY transcription factor WRKY24; Transcription activator. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA- induced promoters. (555 aa)
RR24Two-component response regulator ORR24; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (626 aa)
Q6H635_ORYSJGATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily. (387 aa)
HSFA2EHeat stress transcription factor A-2e; Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response; Belongs to the HSF family. Class A subfamily. (357 aa)
Q6F2Z7_ORYSJGATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily. (386 aa)
MADS6MADS-box transcription factor 6; Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. (250 aa)
GRF10Growth-regulating factor 10; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (211 aa)
DREB1GDehydration-responsive element-binding protein 1G; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). Belongs to the AP2/ERF transcription factor family. ERF subfamily. (224 aa)
Q6ENK5_ORYSJMediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1740 aa)
GRF1Growth-regulating factor 1; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (397 aa)
GRF2Growth-regulating factor 2; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (301 aa)
GRF3Growth-regulating factor 3; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (387 aa)
GRF5Growth-regulating factor 5; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (348 aa)
GRF6Growth-regulating factor 6; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (603 aa)
GRF7Growth-regulating factor 7; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (411 aa)
GRF8Growth-regulating factor 8; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (409 aa)
GRF11Growth-regulating factor 11; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (269 aa)
GRF12Growth-regulating factor 12; Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. (236 aa)
GIF1GRF-interacting factor 1; Transcription coactivator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences. May regulate leaf size, length of stem internodes, and seed size by promoting cell expansion (Probable). Transcription coactivator that plays a role in the regulation of grain size. Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4- [...] (227 aa)
RF2aTranscription factor RF2a; Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. (380 aa)
TAF1Transcription initiation factor TFIID subunit 1; Largest component and core scaffold of the TFIID basal transcription factor complex. (1810 aa)
RR25Two-component response regulator ORR25; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (694 aa)
MED20Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (230 aa)
NFYB4Nuclear transcription factor Y subunit B-4; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development; Belongs to the NFYB/HAP3 subunit family. (143 aa)
DREB2DDehydration-responsive element-binding protein 2D; Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE); Belongs to the AP2/ERF transcription factor family. ERF subfamily. (261 aa)
APO1Protein ABERRANT PANICLE ORGANIZATION 1; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Together with FL/APO2, involved in the temporal regulation of meristem identity during both vegetative and reproductive developments in an APO2- dependent manner (Ref.5, Ref.6,. Promotes spikelet formation by suppressing the precocious conversion of inflorescence meristems to spikelet meristems, probably via a positive regulation of class-C floral homeotic genes, but not [...] (429 aa)
MED4Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (414 aa)
DREB1ADehydration-responsive element-binding protein 1A; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. (238 aa)
NFYB3Nuclear transcription factor Y subunit B-3; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development; Belongs to the NFYB/HAP3 subunit family. (185 aa)
P0018H04.4Probable histone acetyltransferase HAC-like 2; Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. (1439 aa)
LICZinc finger CCCH domain-containing protein 46; Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis. Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses th [...] (390 aa)
GATA20GATA transcription factor 20; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. (340 aa)
DREB2BDehydration-responsive element-binding protein 2B; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. (373 aa)
Q5W6G3_ORYSJSAGA-associated factor 11. (187 aa)
ORC1Origin of replication complex subunit 1; Essential protein (By similarity). Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication (By similarity). H3K4me3 effector that regulates positively the transcription of a subset of genes (By similarity). Required for cell proliferation. (814 aa)
RR22Two-component response regulator ORR22; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins ; Belongs to the ARR family. Type-B subfamily. (696 aa)
NFYB2Nuclear transcription factor Y subunit B-2; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development; Belongs to the NFYB/HAP3 subunit family. (178 aa)
RR26Two-component response regulator ORR26; Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. Belongs to the ARR family. Type-B subfamily. (582 aa)
PCF3Transcription factor PCF3; Transcription activator. Binds the promoter core sequence 5'- GGNCC-3'. (448 aa)
NAC071NAC domain-containing protein 71; Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. (329 aa)
MADS3MADS-box transcription factor 3; Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. (236 aa)
MADS4MADS-box transcription factor 4; Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. (215 aa)
MADS2MADS-box transcription factor 2; Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). (209 aa)
DREB1BDehydration-responsive element-binding protein 1B; Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. (218 aa)
GCN5Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). (511 aa)
HSFA2CHeat stress transcription factor A-2c; Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). (358 aa)
Q336R8_ORYSJMediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (202 aa)
MYC2Transcription factor MYC2; Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. Belongs to the bHLH protein family. (699 aa)
MADS58MADS-box transcription factor 58; Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. (272 aa)
NAC45NAC domain-containing protein 45; Transcription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. (359 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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