18 items (Oryza sativa Japonica) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Predicted Interactions

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Your Input:
	Q0JDN9_ORYSJ	cDNA clone:001-112-E09, full insert sequence. (97 aa)
	Q0J7Y5_ORYSJ	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	OsJ_17170	U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing. (253 aa)
	Q6K2E9_ORYSJ	cDNA clone:001-016-D10, full insert sequence. (101 aa)
	Q6ETN4_ORYSJ	Os02g0177500 protein. (86 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
	Q2R066_ORYSJ	Small nuclear ribonucleoprotein F, putative, expressed. (86 aa)
	Q2QM64_ORYSJ	G-patch domain containing protein, expressed. (844 aa)
	OsJ_10509	U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing. (232 aa)
	Q0J803_ORYSJ	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
	OsJ_01157	Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
	PRP19	Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair. (527 aa)
	Q75K32_ORYSJ	Small nuclear ribonucleoprotein G. (80 aa)
	OJ1163_G08.29	Pre-mRNA-splicing factor SLU7; Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Belongs to the SLU7 family. (536 aa)
	Q6Z2M5_ORYSJ	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	Q6YTY0_ORYSJ	Small nuclear ribonucleoprotein G. (80 aa)

Your Current Organism:

Oryza sativa Japonica

NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM5	Q5N9F1	Q60E54	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	Q5N9F1	Q5TKF9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	OsJ_01157	Q5N9F1	Q9LGE6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	OsJ_10509	Q5N9F1	Q10MR0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing.	0.872
LSM3	OsJ_17170	Q5N9F1	Q0DKM4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing.	0.872
LSM3	PRP19	Q5N9F1	Q9AV81	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair.	0.558
LSM3	Q0J7Y5_ORYSJ	Q5N9F1	Q0J7Y5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.999
LSM3	Q0J803_ORYSJ	Q5N9F1	Q0J803	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
LSM3	Q0JDN9_ORYSJ	Q5N9F1	Q0JDN9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	cDNA clone:001-112-E09, full insert sequence.	0.998
LSM3	Q2R066_ORYSJ	Q5N9F1	Q2R066	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein F, putative, expressed.	0.995
LSM3	Q6ETN4_ORYSJ	Q5N9F1	Q6ETN4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Os02g0177500 protein.	0.995
LSM3	Q6K2E9_ORYSJ	Q5N9F1	Q6K2E9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	cDNA clone:001-016-D10, full insert sequence.	0.999
LSM3	Q6YTY0_ORYSJ	Q5N9F1	Q6YTY0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.998
LSM3	Q6Z2M5_ORYSJ	Q5N9F1	Q6Z2M5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
LSM3	Q75K32_ORYSJ	Q5N9F1	Q75K32	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.998
LSM5	LSM3	Q60E54	Q5N9F1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	LSM8	Q60E54	Q5TKF9	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	OsJ_01157	Q60E54	Q9LGE6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	OsJ_10509	Q60E54	Q10MR0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U2 small nuclear ribonucleoprotein B'; Involved in nuclear pre-mRNA splicing.	0.864
LSM5	OsJ_17170	Q60E54	Q0DKM4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing.	0.864

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