STRINGSTRING
Q6AUI3_ORYSJ Q6AUI3_ORYSJ Q2QZU6_ORYSJ Q2QZU6_ORYSJ Q2R4I6_ORYSJ Q2R4I6_ORYSJ Q53LH8_ORYSJ Q53LH8_ORYSJ Q5SNL8_ORYSJ Q5SNL8_ORYSJ Q5VNP2_ORYSJ Q5VNP2_ORYSJ Q5VQW7_ORYSJ Q5VQW7_ORYSJ Q5WMW4_ORYSJ Q5WMW4_ORYSJ Q654Q5_ORYSJ Q654Q5_ORYSJ Q65X21_ORYSJ Q65X21_ORYSJ Q65X74_ORYSJ Q65X74_ORYSJ Q67V88_ORYSJ Q67V88_ORYSJ Q6ATY6_ORYSJ Q6ATY6_ORYSJ A0A0P0W5J3 A0A0P0W5J3 A0A0P0WED8 A0A0P0WED8 A0A0P0WFD3 A0A0P0WFD3 A0A0P0WG98 A0A0P0WG98 A0A0P0WGE3 A0A0P0WGE3 A0A0P0WGX7 A0A0P0WGX7 A0A0P0WJH1 A0A0P0WJH1 A0A0P0WMP2 A0A0P0WMP2 A0A0P0WNZ6 A0A0P0WNZ6 A0A0P0WR59 A0A0P0WR59 A0A0P0X0W6 A0A0P0X0W6 A0A0P0X1I6 A0A0P0X1I6 A0A0P0X8M3 A0A0P0X8M3 A0A0P0X8U6 A0A0P0X8U6 A0A0P0XEP3 A0A0P0XEP3 A0A0P0XWI9 A0A0P0XWI9 A0A0P0XWL3 A0A0P0XWL3 A0A0P0XWM2 A0A0P0XWM2 A0A0P0XXB0 A0A0P0XXB0 A0A0P0XXF1 A0A0P0XXF1 A0A0P0XYM3 A0A0P0XYM3 A0A0P0Y7J1 A0A0P0Y7J1 A3BMZ6_ORYSJ A3BMZ6_ORYSJ B7EQI7_ORYSJ B7EQI7_ORYSJ B9EXB4_ORYSJ B9EXB4_ORYSJ B9EXR7_ORYSJ B9EXR7_ORYSJ B9FEJ8_ORYSJ B9FEJ8_ORYSJ B9FMY7_ORYSJ B9FMY7_ORYSJ C7JAB3_ORYSJ C7JAB3_ORYSJ rpoB rpoB rpoC1 rpoC1 rpoC2 rpoC2 RPS27AB RPS27AB Q0D6D1_ORYSJ Q0D6D1_ORYSJ Q0D7N2_ORYSJ Q0D7N2_ORYSJ Q0DMY2_ORYSJ Q0DMY2_ORYSJ Q0DRG6_ORYSJ Q0DRG6_ORYSJ Q0IMM9_ORYSJ Q0IMM9_ORYSJ Q9FWV0_ORYSJ Q9FWV0_ORYSJ PRP19 PRP19 RPS27AA RPS27AA Q8LLN5_ORYSJ Q8LLN5_ORYSJ Q8LIB1_ORYSJ Q8LIB1_ORYSJ Q8LI69_ORYSJ Q8LI69_ORYSJ CSN5 CSN5 Q8H5Y4_ORYSJ Q8H5Y4_ORYSJ Q8GSD5_ORYSJ Q8GSD5_ORYSJ Q84TW3_ORYSJ Q84TW3_ORYSJ Q84SP5_ORYSJ Q84SP5_ORYSJ Q7XS72_ORYSJ Q7XS72_ORYSJ Q7XKD9_ORYSJ Q7XKD9_ORYSJ CSB CSB Q75M02_ORYSJ Q75M02_ORYSJ Q6ZL18_ORYSJ Q6ZL18_ORYSJ CSN6 CSN6 Q6ZJ47_ORYSJ Q6ZJ47_ORYSJ Q6ZHF3_ORYSJ Q6ZHF3_ORYSJ Q6ZGM1_ORYSJ Q6ZGM1_ORYSJ Q6ZC85_ORYSJ Q6ZC85_ORYSJ Q6ZA50_ORYSJ Q6ZA50_ORYSJ Q6Z2N2_ORYSJ Q6Z2N2_ORYSJ Q6YX88_ORYSJ Q6YX88_ORYSJ Q6YTX4_ORYSJ Q6YTX4_ORYSJ Q6YTW9_ORYSJ Q6YTW9_ORYSJ Q6YTW7_ORYSJ Q6YTW7_ORYSJ Q6YTW5_ORYSJ Q6YTW5_ORYSJ Q6YTW3_ORYSJ Q6YTW3_ORYSJ DBB1 DBB1 Q6K5F4_ORYSJ Q6K5F4_ORYSJ Q6F2V1_ORYSJ Q6F2V1_ORYSJ A0A0P0W439 A0A0P0W439 A0A0P0W398 A0A0P0W398 A0A0P0W340 A0A0P0W340 A0A0P0W1G0 A0A0P0W1G0 Q0IQ77_ORYSJ Q0IQ77_ORYSJ A0A0P0VZZ4 A0A0P0VZZ4 A0A0P0VI72 A0A0P0VI72 A0A0P0VHW0 A0A0P0VHW0 A0A0N7KTC4 A0A0N7KTC4 A0A0N7KPV9 A0A0N7KPV9 A0A0N7KJZ6 A0A0N7KJZ6 A0A0N7KJM0 A0A0N7KJM0 Q0IUD4_ORYSJ Q0IUD4_ORYSJ Q0J7Q4_ORYSJ Q0J7Q4_ORYSJ Q0J949_ORYSJ Q0J949_ORYSJ Q0JD68_ORYSJ Q0JD68_ORYSJ Q0JK78_ORYSJ Q0JK78_ORYSJ Q0JKA6_ORYSJ Q0JKA6_ORYSJ Q0JKA7_ORYSJ Q0JKA7_ORYSJ Q0JLQ8_ORYSJ Q0JLQ8_ORYSJ Q0JM77_ORYSJ Q0JM77_ORYSJ Q0JNL8_ORYSJ Q0JNL8_ORYSJ CYCH1-1 CYCH1-1 Q10PL7_ORYSJ Q10PL7_ORYSJ Q10QG2_ORYSJ Q10QG2_ORYSJ Q10SN3_ORYSJ Q10SN3_ORYSJ Q10T38_ORYSJ Q10T38_ORYSJ Q2QLZ5_ORYSJ Q2QLZ5_ORYSJ Q2QM04_ORYSJ Q2QM04_ORYSJ Q2QX87_ORYSJ Q2QX87_ORYSJ A0A0N7KJC3 A0A0N7KJC3 A0A0N7KE35 A0A0N7KE35
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q6AUI3_ORYSJOs05g0144800 protein. (758 aa)
Q2QZU6_ORYSJcDNA clone:002-141-D12, full insert sequence. (185 aa)
Q2R4I6_ORYSJCDK-activating kinase assembly factor MAT1 family protein, expressed. (195 aa)
Q53LH8_ORYSJDNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed. (74 aa)
Q5SNL8_ORYSJcDNA clone:J033143J20, full insert sequence. (195 aa)
Q5VNP2_ORYSJOs01g0636700 protein. (469 aa)
Q5VQW7_ORYSJcDNA clone:006-211-F07, full insert sequence. (210 aa)
Q5WMW4_ORYSJcDNA clone:J023109O07, full insert sequence. (856 aa)
Q654Q5_ORYSJOs06g0248400 protein. (767 aa)
Q65X21_ORYSJOs05g0108500 protein. (65 aa)
Q65X74_ORYSJcDNA clone:002-137-A12, full insert sequence. (368 aa)
Q67V88_ORYSJOs06g0235800 protein. (801 aa)
Q6ATY6_ORYSJcDNA clone:J023138C10, full insert sequence. (177 aa)
A0A0P0W5J3Os03g0847800 protein. (42 aa)
A0A0P0WED8Os04g0596850 protein. (94 aa)
A0A0P0WFD3DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1252 aa)
A0A0P0WG98Os04g0675800 protein. (1119 aa)
A0A0P0WGE3Os04g0675700 protein. (130 aa)
A0A0P0WGX7Os04g0692750 protein. (987 aa)
A0A0P0WJH1Os05g0224700 protein. (210 aa)
A0A0P0WMP2Os05g0431266 protein. (78 aa)
A0A0P0WNZ6Os05g0493133 protein. (217 aa)
A0A0P0WR59Os06g0100400 protein. (113 aa)
A0A0P0X0W6Os06g0697400 protein. (103 aa)
A0A0P0X1I6Os07g0105100 protein. (62 aa)
A0A0P0X8M3Os07g0611200 protein. (208 aa)
A0A0P0X8U6Os07g0610700 protein. (253 aa)
A0A0P0XEP3Os08g0332100 protein. (77 aa)
A0A0P0XWI9Os10g0506300 protein. (227 aa)
A0A0P0XWL3Os10g0506425 protein. (76 aa)
A0A0P0XWM2Os10g0506700 protein. (291 aa)
A0A0P0XXB0Os10g0565700 protein. (128 aa)
A0A0P0XXF1Os10g0566050 protein. (94 aa)
A0A0P0XYM3Os11g0143400 protein. (336 aa)
A0A0P0Y7J1Os12g0180400 protein. (103 aa)
A3BMZ6_ORYSJOs07g0656300 protein. (238 aa)
B7EQI7_ORYSJcDNA clone:J023098I05, full insert sequence. (167 aa)
B9EXB4_ORYSJOs01g0530366 protein. (52 aa)
B9EXR7_ORYSJOs01g0585400 protein. (78 aa)
B9FEJ8_ORYSJOs04g0347900 protein. (633 aa)
B9FMY7_ORYSJOs05g0198700 protein. (81 aa)
C7JAB3_ORYSJOs12g0582600 protein. (194 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1075 aa)
rpoC1DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (682 aa)
rpoC2DNA-directed RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1513 aa)
RPS27ABUbiquitin-40S ribosomal protein S27a-2; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...] (155 aa)
Q0D6D1_ORYSJOs07g0490800 protein. (121 aa)
Q0D7N2_ORYSJcDNA clone:J033126I22, full insert sequence. (379 aa)
Q0DMY2_ORYSJOs03g0786800 protein; Belongs to the cullin family. (155 aa)
Q0DRG6_ORYSJOs03g0387000 protein. (600 aa)
Q0IMM9_ORYSJOs12g0560400 protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (104 aa)
Q9FWV0_ORYSJUbiquitin fusion protein, putative, expressed. (147 aa)
PRP19Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair. (527 aa)
RPS27AAUbiquitin-40S ribosomal protein S27a-1; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...] (155 aa)
Q8LLN5_ORYSJcDNA clone:001-013-F09, full insert sequence. (516 aa)
Q8LIB1_ORYSJcDNA clone:J013074K22, full insert sequence. (931 aa)
Q8LI69_ORYSJcDNA clone:J033097N04, full insert sequence. (142 aa)
CSN5COP9 signalosome complex subunit 5; Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF (By similarity). Involved in early response to iron deficiency (Probable). (360 aa)
Q8H5Y4_ORYSJOs07g0611500 protein. (259 aa)
Q8GSD5_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
Q84TW3_ORYSJTranscription elongation factor S-II family protein, expressed. (367 aa)
Q84SP5_ORYSJRNA polymerase Rpb8 family protein, expressed; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (148 aa)
Q7XS72_ORYSJcDNA clone:J033138G07, full insert sequence. (365 aa)
Q7XKD9_ORYSJRNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
CSBDNA excision repair protein CSB; Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. Upon DNA-binding, it locally modifies DNA conformation by wrapping the DNA around itself, thereby modifying the interface between stalled RNA polymerase II and DNA. It is required for transcription-coupled repair complex formation. (1187 aa)
Q75M02_ORYSJcDNA clone:001-102-A10, full insert sequence. (175 aa)
Q6ZL18_ORYSJcDNA clone:J033072E11, full insert sequence. (131 aa)
CSN6COP9 signalosome complex subunit 6; Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (Probable). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF (Probable). Involved in early response to iron deficiency. (329 aa)
Q6ZJ47_ORYSJcDNA clone:001-017-E02, full insert sequence. (426 aa)
Q6ZHF3_ORYSJOs02g0772500 protein. (1164 aa)
Q6ZGM1_ORYSJcDNA clone:J023131N03, full insert sequence. (142 aa)
Q6ZC85_ORYSJcDNA clone:J013129O14, full insert sequence. (604 aa)
Q6ZA50_ORYSJcDNA clone:J013053F13, full insert sequence. (120 aa)
Q6Z2N2_ORYSJcDNA clone:J033106M17, full insert sequence. (289 aa)
Q6YX88_ORYSJcDNA clone:006-305-H09, full insert sequence. (330 aa)
Q6YTX4_ORYSJOs07g0609100 protein. (258 aa)
Q6YTW9_ORYSJOs07g0609600 protein. (185 aa)
Q6YTW7_ORYSJOs07g0609700 protein. (185 aa)
Q6YTW5_ORYSJOs07g0609800 protein. (167 aa)
Q6YTW3_ORYSJOs07g0610200 protein. (237 aa)
DBB1DNA damage-binding protein 1; Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair (Probable). May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex (By similarity). (1090 aa)
Q6K5F4_ORYSJcDNA clone:002-107-H03, full insert sequence. (311 aa)
Q6F2V1_ORYSJDNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed. (142 aa)
A0A0P0W439Os03g0755450 protein. (115 aa)
A0A0P0W398Os03g0755300 protein. (193 aa)
A0A0P0W340Os03g0753400 protein. (522 aa)
A0A0P0W1G0Os03g0646800 protein. (195 aa)
Q0IQ77_ORYSJOs12g0139500 protein. (227 aa)
A0A0P0VZZ4Os03g0600400 protein. (54 aa)
A0A0P0VI72Os02g0307200 protein. (191 aa)
A0A0P0VHW0Os02g0293800 protein. (100 aa)
A0A0N7KTC4Os11g0676650 protein. (80 aa)
A0A0N7KPV9Os08g0426000 protein. (308 aa)
A0A0N7KJZ6Os04g0692700 protein. (785 aa)
A0A0N7KJM0Os04g0596800 protein. (95 aa)
Q0IUD4_ORYSJOs11g0166800 protein. (238 aa)
Q0J7Q4_ORYSJOs08g0171600 protein. (462 aa)
Q0J949_ORYSJPoly [ADP-ribose] polymerase. (959 aa)
Q0JD68_ORYSJcDNA clone:006-303-H11, full insert sequence. (196 aa)
Q0JK78_ORYSJOs01g0691600 protein. (580 aa)
Q0JKA6_ORYSJOs01g0686600 protein. (396 aa)
Q0JKA7_ORYSJOs01g0686500 protein. (398 aa)
Q0JLQ8_ORYSJOs01g0580300 protein. (102 aa)
Q0JM77_ORYSJOs01g0530300 protein. (204 aa)
Q0JNL8_ORYSJOs01g0279200 protein. (439 aa)
CYCH1-1Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. (330 aa)
Q10PL7_ORYSJPoly polymerase catalytic domain containing protein, expressed. (463 aa)
Q10QG2_ORYSJCOP9 signalosome complex subunit 4, putative, expressed. (399 aa)
Q10SN3_ORYSJCOP9 signalosome complex subunit 1, putative, expressed. (441 aa)
Q10T38_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
Q2QLZ5_ORYSJMov34/MPN/PAD-1 family protein, expressed. (499 aa)
Q2QM04_ORYSJMov34/MPN/PAD-1 family protein, expressed. (549 aa)
Q2QX87_ORYSJTranscription elongation factor, putative, expressed. (340 aa)
A0A0N7KJC3General transcription factor IIH subunit. (495 aa)
A0A0N7KE35Os01g0857900 protein. (115 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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