STRINGSTRING
A3AXX0_ORYSJ A3AXX0_ORYSJ A0A0P0Y7J1 A0A0P0Y7J1 A0A0P0XYM3 A0A0P0XYM3 A0A0P0XEP3 A0A0P0XEP3 A0A0P0X8U6 A0A0P0X8U6 A0A0P0X8M3 A0A0P0X8M3 A0A0P0X1M5 A0A0P0X1M5 A0A0P0X1I6 A0A0P0X1I6 Q75M02_ORYSJ Q75M02_ORYSJ Q6ZL18_ORYSJ Q6ZL18_ORYSJ Q6ZGM1_ORYSJ Q6ZGM1_ORYSJ A0A0P0X0W6 A0A0P0X0W6 A0A0P0WWJ7 A0A0P0WWJ7 Q0ITS2_ORYSJ Q0ITS2_ORYSJ Q0IQ77_ORYSJ Q0IQ77_ORYSJ Q0IMM9_ORYSJ Q0IMM9_ORYSJ rpoC2 rpoC2 rpoC1 rpoC1 rpoB rpoB C7J286_ORYSJ C7J286_ORYSJ B9FMY7_ORYSJ B9FMY7_ORYSJ B9FEJ8_ORYSJ B9FEJ8_ORYSJ B9EXB4_ORYSJ B9EXB4_ORYSJ A0A0P0WR59 A0A0P0WR59 A0A0P0WNZ6 A0A0P0WNZ6 A0A0P0WJH1 A0A0P0WJH1 A0A0P0WIR8 A0A0P0WIR8 A0A0P0WGE3 A0A0P0WGE3 A0A0P0WG98 A0A0P0WG98 A0A0P0WFD3 A0A0P0WFD3 A0A0P0WAY1 A0A0P0WAY1 B7EQL6_ORYSJ B7EQL6_ORYSJ Q6ZC85_ORYSJ Q6ZC85_ORYSJ Q9AXB2_ORYSJ Q9AXB2_ORYSJ Q8LI69_ORYSJ Q8LI69_ORYSJ Q8H5Y4_ORYSJ Q8H5Y4_ORYSJ Q8GSD5_ORYSJ Q8GSD5_ORYSJ Q84SP5_ORYSJ Q84SP5_ORYSJ CBP20 CBP20 Q7XS72_ORYSJ Q7XS72_ORYSJ B7EQI7_ORYSJ B7EQI7_ORYSJ Q7XKD9_ORYSJ Q7XKD9_ORYSJ Q6ZA50_ORYSJ Q6ZA50_ORYSJ OsJ_26261 OsJ_26261 A0A0P0W5J3 A0A0P0W5J3 A0A0P0W1G0 A0A0P0W1G0 A0A0P0VPZ7 A0A0P0VPZ7 A0A0P0VIB5 A0A0P0VIB5 A0A0N7KTC4 A0A0N7KTC4 A0A0N7KPV9 A0A0N7KPV9 A0A0N7KM73 A0A0N7KM73 A0A0N7KJC3 A0A0N7KJC3 Q0JK78_ORYSJ Q0JK78_ORYSJ Q0JM77_ORYSJ Q0JM77_ORYSJ CYCH1-1 CYCH1-1 ABH1 ABH1 Q10P09_ORYSJ Q10P09_ORYSJ Q10T38_ORYSJ Q10T38_ORYSJ Q2QWJ7_ORYSJ Q2QWJ7_ORYSJ Q2QZU6_ORYSJ Q2QZU6_ORYSJ Q2R4I6_ORYSJ Q2R4I6_ORYSJ Q53LH8_ORYSJ Q53LH8_ORYSJ Q53P12_ORYSJ Q53P12_ORYSJ Q53QT1_ORYSJ Q53QT1_ORYSJ Q5N8X8_ORYSJ Q5N8X8_ORYSJ Q5SNL8_ORYSJ Q5SNL8_ORYSJ Q5VQW7_ORYSJ Q5VQW7_ORYSJ Q65X21_ORYSJ Q65X21_ORYSJ Q0J7Q4_ORYSJ Q0J7Q4_ORYSJ Q69JW8_ORYSJ Q69JW8_ORYSJ Q69T55_ORYSJ Q69T55_ORYSJ Q6ATY6_ORYSJ Q6ATY6_ORYSJ Q6AUI3_ORYSJ Q6AUI3_ORYSJ Q6ER70_ORYSJ Q6ER70_ORYSJ Q6F2V1_ORYSJ Q6F2V1_ORYSJ Q6K246_ORYSJ Q6K246_ORYSJ Q6L4V9_ORYSJ Q6L4V9_ORYSJ Q6YTW3_ORYSJ Q6YTW3_ORYSJ Q6YTW5_ORYSJ Q6YTW5_ORYSJ Q6YTW7_ORYSJ Q6YTW7_ORYSJ Q6YTW9_ORYSJ Q6YTW9_ORYSJ Q6YTX4_ORYSJ Q6YTX4_ORYSJ Q6YX88_ORYSJ Q6YX88_ORYSJ Q6Z2N2_ORYSJ Q6Z2N2_ORYSJ A3BMZ6_ORYSJ A3BMZ6_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A3AXX0_ORYSJOs04g0640900 protein. (637 aa)
A0A0P0Y7J1Os12g0180400 protein. (103 aa)
A0A0P0XYM3Os11g0143400 protein. (336 aa)
A0A0P0XEP3Os08g0332100 protein. (77 aa)
A0A0P0X8U6Os07g0610700 protein. (253 aa)
A0A0P0X8M3Os07g0611200 protein. (208 aa)
A0A0P0X1M5Os06g0731700 protein. (349 aa)
A0A0P0X1I6Os07g0105100 protein. (62 aa)
Q75M02_ORYSJcDNA clone:001-102-A10, full insert sequence. (175 aa)
Q6ZL18_ORYSJcDNA clone:J033072E11, full insert sequence. (131 aa)
Q6ZGM1_ORYSJcDNA clone:J023131N03, full insert sequence. (142 aa)
A0A0P0X0W6Os06g0697400 protein. (103 aa)
A0A0P0WWJ7Os06g0472700 protein. (499 aa)
Q0ITS2_ORYSJOs11g0223400 protein. (406 aa)
Q0IQ77_ORYSJOs12g0139500 protein. (227 aa)
Q0IMM9_ORYSJOs12g0560400 protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (104 aa)
rpoC2DNA-directed RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1513 aa)
rpoC1DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (682 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1075 aa)
C7J286_ORYSJOs05g0506200 protein. (586 aa)
B9FMY7_ORYSJOs05g0198700 protein. (81 aa)
B9FEJ8_ORYSJOs04g0347900 protein. (633 aa)
B9EXB4_ORYSJOs01g0530366 protein. (52 aa)
A0A0P0WR59Os06g0100400 protein. (113 aa)
A0A0P0WNZ6Os05g0493133 protein. (217 aa)
A0A0P0WJH1Os05g0224700 protein. (210 aa)
A0A0P0WIR8Os05g0183400 protein. (326 aa)
A0A0P0WGE3Os04g0675700 protein. (130 aa)
A0A0P0WG98Os04g0675800 protein. (1119 aa)
A0A0P0WFD3DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1252 aa)
A0A0P0WAY1Os04g0458200 protein. (659 aa)
B7EQL6_ORYSJcDNA clone:J023105K02, full insert sequence. (322 aa)
Q6ZC85_ORYSJcDNA clone:J013129O14, full insert sequence. (604 aa)
Q9AXB2_ORYSJcDNA clone:J013038F15, full insert sequence. (646 aa)
Q8LI69_ORYSJcDNA clone:J033097N04, full insert sequence. (142 aa)
Q8H5Y4_ORYSJOs07g0611500 protein. (259 aa)
Q8GSD5_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
Q84SP5_ORYSJRNA polymerase Rpb8 family protein, expressed; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (148 aa)
CBP20Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA- mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG- capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N- terminal loop and lock the CBC into a high affinity cap-binding state wi [...] (243 aa)
Q7XS72_ORYSJcDNA clone:J033138G07, full insert sequence. (365 aa)
B7EQI7_ORYSJcDNA clone:J023098I05, full insert sequence. (167 aa)
Q7XKD9_ORYSJRNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
Q6ZA50_ORYSJcDNA clone:J013053F13, full insert sequence. (120 aa)
OsJ_26261mRNA cap guanine-N7 methyltransferase 1; mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC (By similarity); Belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0 methyltransferase family. (369 aa)
A0A0P0W5J3Os03g0847800 protein. (42 aa)
A0A0P0W1G0Os03g0646800 protein. (195 aa)
A0A0P0VPZ7Os02g0772000 protein. (346 aa)
A0A0P0VIB5Os02g0320600 protein. (203 aa)
A0A0N7KTC4Os11g0676650 protein. (80 aa)
A0A0N7KPV9Os08g0426000 protein. (308 aa)
A0A0N7KM73Os06g0523100 protein. (496 aa)
A0A0N7KJC3General transcription factor IIH subunit. (495 aa)
Q0JK78_ORYSJOs01g0691600 protein. (580 aa)
Q0JM77_ORYSJOs01g0530300 protein. (204 aa)
CYCH1-1Cyclin-H1-1; Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. (330 aa)
ABH1Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state [...] (867 aa)
Q10P09_ORYSJTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
Q10T38_ORYSJDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
Q2QWJ7_ORYSJmRNA capping enzyme, C-terminal domain containing protein, expressed. (665 aa)
Q2QZU6_ORYSJcDNA clone:002-141-D12, full insert sequence. (185 aa)
Q2R4I6_ORYSJCDK-activating kinase assembly factor MAT1 family protein, expressed. (195 aa)
Q53LH8_ORYSJDNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed. (74 aa)
Q53P12_ORYSJcDNA clone:J023120N10, full insert sequence. (492 aa)
Q53QT1_ORYSJTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (529 aa)
Q5N8X8_ORYSJOs01g0772200 protein. (277 aa)
Q5SNL8_ORYSJcDNA clone:J033143J20, full insert sequence. (195 aa)
Q5VQW7_ORYSJcDNA clone:006-211-F07, full insert sequence. (210 aa)
Q65X21_ORYSJOs05g0108500 protein. (65 aa)
Q0J7Q4_ORYSJOs08g0171600 protein. (462 aa)
Q69JW8_ORYSJcDNA clone:001-202-D10, full insert sequence. (655 aa)
Q69T55_ORYSJOs06g0208300 protein. (291 aa)
Q6ATY6_ORYSJcDNA clone:J023138C10, full insert sequence. (177 aa)
Q6AUI3_ORYSJOs05g0144800 protein. (758 aa)
Q6ER70_ORYSJcDNA clone:002-139-F04, full insert sequence. (143 aa)
Q6F2V1_ORYSJDNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed. (142 aa)
Q6K246_ORYSJOs02g0259100 protein. (631 aa)
Q6L4V9_ORYSJcDNA clone:J023147N17, full insert sequence. (259 aa)
Q6YTW3_ORYSJOs07g0610200 protein. (237 aa)
Q6YTW5_ORYSJOs07g0609800 protein. (167 aa)
Q6YTW7_ORYSJOs07g0609700 protein. (185 aa)
Q6YTW9_ORYSJOs07g0609600 protein. (185 aa)
Q6YTX4_ORYSJOs07g0609100 protein. (258 aa)
Q6YX88_ORYSJcDNA clone:006-305-H09, full insert sequence. (330 aa)
Q6Z2N2_ORYSJcDNA clone:J033106M17, full insert sequence. (289 aa)
A3BMZ6_ORYSJOs07g0656300 protein. (238 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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