STRINGSTRING
A0A0P0WXU0 A0A0P0WXU0 Q75K32_ORYSJ Q75K32_ORYSJ Q7EY69_ORYSJ Q7EY69_ORYSJ Q7XIR8_ORYSJ Q7XIR8_ORYSJ Q7XN15_ORYSJ Q7XN15_ORYSJ Q7XTJ6_ORYSJ Q7XTJ6_ORYSJ Q7XXR0_ORYSJ Q7XXR0_ORYSJ Q84JJ2_ORYSJ Q84JJ2_ORYSJ CBP20 CBP20 Q84MU4_ORYSJ Q84MU4_ORYSJ Q8H7V8_ORYSJ Q8H7V8_ORYSJ Q8H8U3_ORYSJ Q8H8U3_ORYSJ Q8RZK0_ORYSJ Q8RZK0_ORYSJ Q9FNU4_ORYSJ Q9FNU4_ORYSJ U2AF65A U2AF65A Q2R066_ORYSJ Q2R066_ORYSJ U2AF65B U2AF65B Q2QZ01_ORYSJ Q2QZ01_ORYSJ Q2QNB5_ORYSJ Q2QNB5_ORYSJ Q10SU9_ORYSJ Q10SU9_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q10NF9_ORYSJ Q10NF9_ORYSJ Q10N90_ORYSJ Q10N90_ORYSJ Q10N19_ORYSJ Q10N19_ORYSJ Q10LL5_ORYSJ Q10LL5_ORYSJ ABH1 ABH1 Q10B15_ORYSJ Q10B15_ORYSJ AIP1 AIP1 Q0JK16_ORYSJ Q0JK16_ORYSJ OsJ_015854 OsJ_015854 Q0J803_ORYSJ Q0J803_ORYSJ Q0J7V5_ORYSJ Q0J7V5_ORYSJ Q0IZJ8_ORYSJ Q0IZJ8_ORYSJ Q0DNZ7_ORYSJ Q0DNZ7_ORYSJ Q0DL70_ORYSJ Q0DL70_ORYSJ Q0D3Q1_ORYSJ Q0D3Q1_ORYSJ MAGO2 MAGO2 C7IZF7_ORYSJ C7IZF7_ORYSJ B9FDD2_ORYSJ B9FDD2_ORYSJ B7F8L5_ORYSJ B7F8L5_ORYSJ A3AYP1_ORYSJ A3AYP1_ORYSJ A0A0P0Y5M2 A0A0P0Y5M2 A0A0P0XYR1 A0A0P0XYR1 A0A0P0XVH2 A0A0P0XVH2 MAGO1 MAGO1 A0A0P0X9Z4 A0A0P0X9Z4 A0A0P0X3W0 A0A0P0X3W0 A0A0P0X3R7 A0A0P0X3R7 A0A0P0X0C9 A0A0P0X0C9 A0A0P0WY39 A0A0P0WY39 Q75IT7_ORYSJ Q75IT7_ORYSJ A0A0P0WW08 A0A0P0WW08 A0A0P0WUL0 A0A0P0WUL0 A0A0P0WLH4 A0A0P0WLH4 A0A0P0VWK8 A0A0P0VWK8 A0A0P0VQ47 A0A0P0VQ47 A0A0P0VGM7 A0A0P0VGM7 A0A0P0VGL8 A0A0P0VGL8 A0A0P0VGE7 A0A0P0VGE7 A0A0P0VC44 A0A0P0VC44 A0A0P0V1N4 A0A0P0V1N4 A0A0N7KP35 A0A0N7KP35 A0A0N7KH51 A0A0N7KH51 A0A0N7KCU8 A0A0N7KCU8 Q6Z6M0_ORYSJ Q6Z6M0_ORYSJ Q6Z308_ORYSJ Q6Z308_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6Z7V3_ORYSJ Q6Z7V3_ORYSJ Q6ZAQ9_ORYSJ Q6ZAQ9_ORYSJ Q6ZJ19_ORYSJ Q6ZJ19_ORYSJ OJ1163_G08.29 OJ1163_G08.29 Q75IR8_ORYSJ Q75IR8_ORYSJ Q6Z725_ORYSJ Q6Z725_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6L5D9_ORYSJ Q6L5D9_ORYSJ RSZ23 RSZ23 OJ1149_C12.8 OJ1149_C12.8 RSZP21 RSZP21 Q6K4E0_ORYSJ Q6K4E0_ORYSJ Q6H5Y8_ORYSJ Q6H5Y8_ORYSJ Q6EU58_ORYSJ Q6EU58_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q6EQW6_ORYSJ Q6EQW6_ORYSJ Q6AUN0_ORYSJ Q6AUN0_ORYSJ OsJ_016547 OsJ_016547 Q69VQ7_ORYSJ Q69VQ7_ORYSJ RSZ21A RSZ21A Q67X81_ORYSJ Q67X81_ORYSJ OJ1003_C09.22 OJ1003_C09.22 Q652G7_ORYSJ Q652G7_ORYSJ Q5ZCD9_ORYSJ Q5ZCD9_ORYSJ AIP2 AIP2 Q53PI0_ORYSJ Q53PI0_ORYSJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0P0WXU0Os06g0558766 protein. (232 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q7EY69_ORYSJOs08g0427900 protein. (286 aa)
Q7XIR8_ORYSJOs07g0508000 protein. (1280 aa)
Q7XN15_ORYSJPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (556 aa)
Q7XTJ6_ORYSJOs04g0118900 protein. (245 aa)
Q7XXR0_ORYSJStem-specific protein TSJT1, putative, expressed. (251 aa)
Q84JJ2_ORYSJCleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed. (700 aa)
CBP20Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA- mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG- capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N- terminal loop and lock the CBC into a high affinity cap-binding state wi [...] (243 aa)
Q84MU4_ORYSJPre-mRNA splicing factor PRP17, putative, expressed. (573 aa)
Q8H7V8_ORYSJKinase interacting protein, putative, expressed. (351 aa)
Q8H8U3_ORYSJOs03g0283300 protein. (177 aa)
Q8RZK0_ORYSJcDNA clone:001-113-F12, full insert sequence. (279 aa)
Q9FNU4_ORYSJCleavage stimulation factor, 50 kDa subunit, putative, expressed. (434 aa)
U2AF65ASplicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA. (574 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
U2AF65BSplicing factor U2af large subunit B; Necessary for the splicing of pre-mRNA. (548 aa)
Q2QZ01_ORYSJRNA recognition motif family protein, expressed. (228 aa)
Q2QNB5_ORYSJSuppressor of forked protein containing protein, expressed. (731 aa)
Q10SU9_ORYSJTHO complex subunit 1, putative, expressed. (638 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q10NF9_ORYSJRetrotransposon protein, putative, unclassified, expressed. (840 aa)
Q10N90_ORYSJRNA and export factor-binding protein, putative, expressed. (273 aa)
Q10N19_ORYSJRNA recognition motif family protein, expressed. (330 aa)
Q10LL5_ORYSJPre-mRNA splicing factor SF2, putative, expressed. (286 aa)
ABH1Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state [...] (867 aa)
Q10B15_ORYSJcDNA clone:002-149-C11, full insert sequence. (574 aa)
AIP1DEAD-box ATP-dependent RNA helicase 56; ATP-binding RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus (By similarity). Required for tapetal programmed cell death (PCD) and degeneration during anther development. Forms dimer with AIP2 and binds the promoter region of the cysteine protease CP1. Can complement the yeast RNA helicase SUB2. Plants silencing AIP1 and AIP2 are male sterile ; Belongs to the DEAD box helicase family. DECD subfamily. (432 aa)
Q0JK16_ORYSJOs01g0702900 protein. (129 aa)
OsJ_015854Zinc finger CCCH domain-containing protein 32. (711 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0J7V5_ORYSJcDNA clone:001-025-B05, full insert sequence. (242 aa)
Q0IZJ8_ORYSJOs09g0566100 protein. (1069 aa)
Q0DNZ7_ORYSJOs03g0725100 protein. (661 aa)
Q0DL70_ORYSJOs05g0120100 protein. (323 aa)
Q0D3Q1_ORYSJOs07g0673500 protein. (296 aa)
MAGO2Protein mago nashi homolog 2; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby in [...] (160 aa)
C7IZF7_ORYSJOs03g0725050 protein. (285 aa)
B9FDD2_ORYSJPre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (202 aa)
B7F8L5_ORYSJcDNA, clone: J065099G09, full insert sequence. (546 aa)
A3AYP1_ORYSJOs04g0679400 protein. (258 aa)
A0A0P0Y5M2Os11g0702600 protein. (343 aa)
A0A0P0XYR1Os11g0100200 protein. (219 aa)
A0A0P0XVH2Os10g0483700 protein. (152 aa)
MAGO1Protein mago nashi homolog 1; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby in [...] (158 aa)
A0A0P0X9Z4Os07g0658500 protein. (347 aa)
A0A0P0X3W0Os07g0237100 protein. (340 aa)
A0A0P0X3R7Os07g0221100 protein. (130 aa)
A0A0P0X0C9Os06g0698400 protein. (123 aa)
A0A0P0WY39Os06g0558700 protein. (329 aa)
Q75IT7_ORYSJOs05g0365000 protein. (353 aa)
A0A0P0WW08Os06g0319600 protein. (129 aa)
A0A0P0WUL0Os06g0248200 protein. (164 aa)
A0A0P0WLH4Os05g0364600 protein. (319 aa)
A0A0P0VWK8Os03g0308850 protein. (200 aa)
A0A0P0VQ47Os02g0771500 protein. (71 aa)
A0A0P0VGM7Os02g0223600 protein. (137 aa)
A0A0P0VGL8Os02g0223300 protein. (221 aa)
A0A0P0VGE7Os02g0216100 protein. (207 aa)
A0A0P0VC44Os01g0916800 protein. (1667 aa)
A0A0P0V1N4Os01g0316600 protein. (124 aa)
A0A0N7KP35Os07g0688500 protein. (524 aa)
A0A0N7KH51Os03g0308900 protein. (491 aa)
A0A0N7KCU8Os01g0316550 protein. (133 aa)
Q6Z6M0_ORYSJProtein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (432 aa)
Q6Z308_ORYSJcDNA clone:001-114-C01, full insert sequence. (485 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6Z7V3_ORYSJcDNA clone:J023081D16, full insert sequence. (216 aa)
Q6ZAQ9_ORYSJcDNA clone:J013073B17, full insert sequence. (971 aa)
Q6ZJ19_ORYSJcDNA clone:J023123D21, full insert sequence. (90 aa)
OJ1163_G08.29Pre-mRNA-splicing factor SLU7; Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Belongs to the SLU7 family. (536 aa)
Q75IR8_ORYSJcDNA clone:001-116-H05, full insert sequence. (338 aa)
Q6Z725_ORYSJcDNA clone:J023126J16, full insert sequence. (279 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6L5D9_ORYSJOs05g0581900 protein. (281 aa)
RSZ23Serine/arginine-rich splicing factor RSZ23; Involved in pre-mRNA splicing. In protoplast assay, enhances splicing efficiency of WAXY intron 1 and alters the selection of the 5'-splice sites by stimulating site 1 (proximal site). Belongs to the splicing factor SR family. (200 aa)
OJ1149_C12.8Zinc finger CCCH domain-containing protein 19. (647 aa)
RSZP21Serine/arginine-rich splicing factor RSZ21; Involved in pre-mRNA splicing; Belongs to the splicing factor SR family. (185 aa)
Q6K4E0_ORYSJcDNA clone:J013119F12, full insert sequence. (279 aa)
Q6H5Y8_ORYSJPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (610 aa)
Q6EU58_ORYSJcDNA clone:J023106N09, full insert sequence. (656 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q6EQW6_ORYSJcDNA clone:J023052C02, full insert sequence. (451 aa)
Q6AUN0_ORYSJcDNA clone:001-115-B06, full insert sequence. (243 aa)
OsJ_016547Zinc finger CCCH domain-containing protein 34. (493 aa)
Q69VQ7_ORYSJOs09g0298400 protein. (332 aa)
RSZ21ASerine/arginine-rich splicing factor RSZ21A; Involved in pre-mRNA splicing; Belongs to the splicing factor SR family. (185 aa)
Q67X81_ORYSJcDNA clone:001-011-A07, full insert sequence. (204 aa)
OJ1003_C09.22Cleavage and polyadenylation specificity factor subunit 2; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. (738 aa)
Q652G7_ORYSJcDNA clone:001-043-F10, full insert sequence. (294 aa)
Q5ZCD9_ORYSJcDNA clone:006-311-F07, full insert sequence. (324 aa)
AIP2DEAD-box ATP-dependent RNA helicase 15; ATP-binding RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus (By similarity). Required for tapetal programmed cell death (PCD) and degeneration during anther development. Forms dimer with AIP1 and binds the promoter region of the cysteine protease CP1. Can complement the yeast RNA helicase SUB2. Plants silencing AIP1 and AIP2 are male sterile. (432 aa)
Q53PI0_ORYSJRNA recognition motif family protein, expressed. (495 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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