STRINGSTRING
B7F8L5_ORYSJ B7F8L5_ORYSJ Q9FNU4_ORYSJ Q9FNU4_ORYSJ CBP20 CBP20 Q84JJ2_ORYSJ Q84JJ2_ORYSJ CPSF1_ORYSJ CPSF1_ORYSJ Q7XN15_ORYSJ Q7XN15_ORYSJ Q75K32_ORYSJ Q75K32_ORYSJ Q6ZAQ9_ORYSJ Q6ZAQ9_ORYSJ Q6Z6M0_ORYSJ Q6Z6M0_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6YU78_ORYSJ Q6YU78_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6H5Y8_ORYSJ Q6H5Y8_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ Q69R94_ORYSJ Q69R94_ORYSJ Q658G6_ORYSJ Q658G6_ORYSJ OJ1003_C09.22 OJ1003_C09.22 Q53PI0_ORYSJ Q53PI0_ORYSJ Q2R066_ORYSJ Q2R066_ORYSJ Q2QNB5_ORYSJ Q2QNB5_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q10P36_ORYSJ Q10P36_ORYSJ ABH1 ABH1 Q0JK62_ORYSJ Q0JK62_ORYSJ Q0JK16_ORYSJ Q0JK16_ORYSJ Q0J803_ORYSJ Q0J803_ORYSJ Q0IZJ8_ORYSJ Q0IZJ8_ORYSJ Q0DNZ7_ORYSJ Q0DNZ7_ORYSJ C7IZF7_ORYSJ C7IZF7_ORYSJ C7IXA8_ORYSJ C7IXA8_ORYSJ B9FDD2_ORYSJ B9FDD2_ORYSJ A0A0P0Y5M2 A0A0P0Y5M2 A0A0P0X9Z4 A0A0P0X9Z4 A0A0P0X3R7 A0A0P0X3R7 A0A0P0X0C9 A0A0P0X0C9 A0A0P0WY39 A0A0P0WY39 A0A0P0WXU0 A0A0P0WXU0 A0A0P0WW08 A0A0P0WW08 A0A0P0WUL0 A0A0P0WUL0 A0A0P0VWK8 A0A0P0VWK8 A0A0P0VQ47 A0A0P0VQ47 A0A0P0VGM7 A0A0P0VGM7 A0A0P0VGL8 A0A0P0VGL8 A0A0P0VGE7 A0A0P0VGE7 A0A0N7KP35 A0A0N7KP35 A0A0N7KH51 A0A0N7KH51
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B7F8L5_ORYSJcDNA, clone: J065099G09, full insert sequence. (546 aa)
Q9FNU4_ORYSJCleavage stimulation factor, 50 kDa subunit, putative, expressed. (434 aa)
CBP20Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA- mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG- capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N- terminal loop and lock the CBC into a high affinity cap-binding state wi [...] (243 aa)
Q84JJ2_ORYSJCleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed. (700 aa)
CPSF1_ORYSJProbable cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity). (1441 aa)
Q7XN15_ORYSJPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (556 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6ZAQ9_ORYSJcDNA clone:J013073B17, full insert sequence. (971 aa)
Q6Z6M0_ORYSJProtein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (432 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6H5Y8_ORYSJPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (610 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
Q69R94_ORYSJOs07g0693900 protein. (1245 aa)
Q658G6_ORYSJOs06g0130200 protein. (445 aa)
OJ1003_C09.22Cleavage and polyadenylation specificity factor subunit 2; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. (738 aa)
Q53PI0_ORYSJRNA recognition motif family protein, expressed. (495 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
Q2QNB5_ORYSJSuppressor of forked protein containing protein, expressed. (731 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q10P36_ORYSJcDNA, clone: J100072G22, full insert sequence. (157 aa)
ABH1Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state [...] (867 aa)
Q0JK62_ORYSJOs01g0694300 protein. (141 aa)
Q0JK16_ORYSJOs01g0702900 protein. (129 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0IZJ8_ORYSJOs09g0566100 protein. (1069 aa)
Q0DNZ7_ORYSJOs03g0725100 protein. (661 aa)
C7IZF7_ORYSJOs03g0725050 protein. (285 aa)
C7IXA8_ORYSJOs01g0694400 protein. (104 aa)
B9FDD2_ORYSJPre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (202 aa)
A0A0P0Y5M2Os11g0702600 protein. (343 aa)
A0A0P0X9Z4Os07g0658500 protein. (347 aa)
A0A0P0X3R7Os07g0221100 protein. (130 aa)
A0A0P0X0C9Os06g0698400 protein. (123 aa)
A0A0P0WY39Os06g0558700 protein. (329 aa)
A0A0P0WXU0Os06g0558766 protein. (232 aa)
A0A0P0WW08Os06g0319600 protein. (129 aa)
A0A0P0WUL0Os06g0248200 protein. (164 aa)
A0A0P0VWK8Os03g0308850 protein. (200 aa)
A0A0P0VQ47Os02g0771500 protein. (71 aa)
A0A0P0VGM7Os02g0223600 protein. (137 aa)
A0A0P0VGL8Os02g0223300 protein. (221 aa)
A0A0P0VGE7Os02g0216100 protein. (207 aa)
A0A0N7KP35Os07g0688500 protein. (524 aa)
A0A0N7KH51Os03g0308900 protein. (491 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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