STRINGSTRING
AMT1-1 AMT1-1 MADS25 MADS25 OsPTR1 OsPTR1 NRT2.3 NRT2.3 NLP3 NLP3 NRT2.4 NRT2.4 NRT2.1 NRT2.1 NRT2.2 NRT2.2 GLN1-2 GLN1-2 GLN1-1 GLN1-1 SPX4 SPX4 NLP1 NLP1 MADS2 MADS2 GLN1-3 GLN1-3 MADS27 MADS27 AMT1-2 AMT1-2 AMT1-3 AMT1-3 MADS23 MADS23 MADS57 MADS57 NAR2.1 NAR2.1 GRF4 GRF4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AMT1-1Ammonium transporter 1 member 1; Ammonium transporter probably involved in ammonium uptake from the soil; Belongs to the ammonia transporter channel (TC 1.A.11.2) family. (498 aa)
MADS25MADS-box transcription factor 25; Probable transcription factor. (227 aa)
OsPTR1Peptide transporter PTR2, putative, expressed. (593 aa)
NRT2.3High-affinity nitrate transporter 2.3; Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NAR2.1. Imports nitrate with high affinity when expressed with NAR2.1 in a heterologous system (Xenopus oocytes). Plays a key role in long-distance nitrate transport from root to shoot particularly at low external nitrate supply; Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family. (516 aa)
NLP3Protein NLP3; Probable transcription factor. (938 aa)
NRT2.4Probable high-affinity nitrate transporter 2.4; Involved in nitrate transport; Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family. (485 aa)
NRT2.1High-affinity nitrate transporter 2.1; Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NAR2.1. Imports nitrate with high affinity when expressed with NAR2.1 in a heterologous system (Xenopus oocytes). (533 aa)
NRT2.2High-affinity nitrate transporter 2.2; Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NAR2.1. Imports nitrate with high affinity when expressed with NAR2.1 in a heterologous system (Xenopus oocytes). (533 aa)
GLN1-2Glutamine synthetase cytosolic isozyme 1-2; High-affinity glutamine synthetase. May play a role in the primary assimilation of ammonium taken up by roots. (357 aa)
GLN1-1Glutamine synthetase cytosolic isozyme 1-1; High-affinity glutamine synthetase. May be a major component of the cytosolic glutamine synthetic pathway in leaf blades. (356 aa)
SPX4SPX domain-containing protein 4; Inositol polyphosphate sensor that associates with transcription factors to regulate Pi starvation responses. The SPX domain provides a basic binding surface for inositol polyphosphate signaling molecules. Interacts with PHR2 to inhibits its translocation to the nucleus and repress its DNA-binding activity, and then negatively regulate Pi signaling. (320 aa)
NLP1Protein NLP1; Probable transcription factor. (942 aa)
MADS2MADS-box transcription factor 2; Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). (209 aa)
GLN1-3Glutamine synthetase cytosolic isozyme 1-3; Belongs to the glutamine synthetase family. (370 aa)
MADS27MADS-box transcription factor 27; Probable transcription factor. (240 aa)
AMT1-2Ammonium transporter 1 member 2; Ammonium transporter probably involved in ammonium uptake from the soil and ammonium uptake and retrieval in the vascular system. Belongs to the ammonia transporter channel (TC 1.A.11.2) family. (496 aa)
AMT1-3Ammonium transporter 1 member 3; Ammonium transporter probably involved in ammonium uptake from the soil; Belongs to the ammonia transporter channel (TC 1.A.11.2) family. (498 aa)
MADS23MADS-box transcription factor 23; Probable transcription factor. (159 aa)
MADS57MADS-box transcription factor 57; Transcriptional factor that targets the CArG motif 5'- C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. (241 aa)
NAR2.1High-affinity nitrate transporter-activating protein 2.1; Acts as a dual component transporter with NTR2.1, NRT2.2 and NRT2.3. Required for high-affinity nitrate transport. Involved in the regulation of NRT2.1, NRT2.2 and NRT2.3 expression, and in both, HATS (high-affinity transport system) and LATS (low-affinity transport system) activities in plant roots. Imports nitrate with high affinity when expressed with NTR2.1, NTR2.2 or NTR2.3 in a heterologous system (Xenopus oocytes); Belongs to the NAR2 family. (206 aa)
GRF4Growth-regulating factor 4; Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences. Transcription activator that plays a regulatory role in grain development. Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width. Positively regulates the expression of genes promoting cell proliferation. Activates the expression of expansin genes to promote cell expansion and grain size. May promote grain size by activating brassinosteroid responses. Component of a network f [...] (394 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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