STRINGSTRING
Q6YU78_ORYSJ Q6YU78_ORYSJ OsJ_01157 OsJ_01157 Q75K32_ORYSJ Q75K32_ORYSJ Q6Z2M5_ORYSJ Q6Z2M5_ORYSJ Q6YY16_ORYSJ Q6YY16_ORYSJ Q6YTY0_ORYSJ Q6YTY0_ORYSJ Q6K2E9_ORYSJ Q6K2E9_ORYSJ Q6ETN4_ORYSJ Q6ETN4_ORYSJ LSM5 LSM5 Q5WMV0_ORYSJ Q5WMV0_ORYSJ LSM8 LSM8 LSM3 LSM3 Q2R066_ORYSJ Q2R066_ORYSJ Q10PA9_ORYSJ Q10PA9_ORYSJ Q0JDN9_ORYSJ Q0JDN9_ORYSJ LSM1 LSM1 Q0J803_ORYSJ Q0J803_ORYSJ Q0J7Y5_ORYSJ Q0J7Y5_ORYSJ A0A0P0XCL4 A0A0P0XCL4 A0A0P0VDD6 A0A0P0VDD6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q6YU78_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
OsJ_01157Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
Q75K32_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6Z2M5_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Q6YY16_ORYSJSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Q6YTY0_ORYSJSmall nuclear ribonucleoprotein G. (80 aa)
Q6K2E9_ORYSJcDNA clone:001-016-D10, full insert sequence. (101 aa)
Q6ETN4_ORYSJOs02g0177500 protein. (86 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
Q5WMV0_ORYSJSmall nuclear ribonucleoprotein Sm D2. (105 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
Q2R066_ORYSJSmall nuclear ribonucleoprotein F, putative, expressed. (86 aa)
Q10PA9_ORYSJSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Q0JDN9_ORYSJcDNA clone:001-112-E09, full insert sequence. (97 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (129 aa)
Q0J803_ORYSJSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (64 aa)
Q0J7Y5_ORYSJSm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A0P0XCL4Os08g0177700 protein. (108 aa)
A0A0P0VDD6Small nuclear ribonucleoprotein Sm D2. (103 aa)
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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