STRINGSTRING
Pmen_1696 Pmen_1696 Pmen_1697 Pmen_1697 Pmen_1698 Pmen_1698 Pmen_1699 Pmen_1699 Pmen_3111 Pmen_3111 Pmen_3112 Pmen_3112 Pmen_3113 Pmen_3113 Pmen_3114 Pmen_3114 Pmen_3115 Pmen_3115 Pmen_3116 Pmen_3116 Pmen_3117 Pmen_3117 Pmen_3118 Pmen_3118 Pmen_3119 Pmen_3119 Pmen_3120 Pmen_3120 Pmen_4230 Pmen_4230 Pmen_4231 Pmen_4231
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pmen_1696TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (360 aa)
Pmen_1697PFAM: homogentisate 1,2-dioxygenase. (379 aa)
Pmen_1698PFAM: fumarylacetoacetate (FAA) hydrolase. (326 aa)
Pmen_1699TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain. (216 aa)
Pmen_3111Transcriptional regulator, TyrR; PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase. (517 aa)
Pmen_3112TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase. (261 aa)
Pmen_3113PFAM: transcriptional coactivator/pterin dehydratase. (117 aa)
Pmen_3114Aromatic amino acid aminotransferase apoenzyme; PFAM: aminotransferase, class I and II. (398 aa)
Pmen_3115PFAM: Substrate-binding region of ABC-type glycine betaine transport system. (304 aa)
Pmen_3116PFAM: binding-protein-dependent transport systems inner membrane component. (386 aa)
Pmen_3117PFAM: ABC transporter related; SMART: AAA ATPase. (312 aa)
Pmen_3118PFAM: binding-protein-dependent transport systems inner membrane component. (242 aa)
Pmen_3119PFAM: major facilitator superfamily MFS_1. (420 aa)
Pmen_3120Glucosyl-glycerol phosphate synthase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; glucosylglycerol-phosphate synthase; PFAM: glycosyl transferase, family 20; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3. (752 aa)
Pmen_4230PFAM: fumarylacetoacetate (FAA) hydrolase. (232 aa)
Pmen_4231PFAM: FAD linked oxidase domain protein. (463 aa)
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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