STRINGSTRING
Pmen_1013 Pmen_1013 Pmen_1014 Pmen_1014 Pmen_1015 Pmen_1015 opgH opgH opgG opgG Pmen_3714 Pmen_3714
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pmen_1013PFAM: Paraquat-inducible protein A. (219 aa)
Pmen_1014PFAM: Paraquat-inducible protein A. (205 aa)
Pmen_1015PFAM: Mammalian cell entry related domain protein. (767 aa)
opgHGlycosyl transferase, family 2; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (845 aa)
opgGPeriplasmic glucan biosynthesis protein, MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (511 aa)
Pmen_3714PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein. (212 aa)
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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