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rnfB rnfB Pmen_0142 Pmen_0142 Pmen_0143 Pmen_0143 Pmen_0145 Pmen_0145 Pmen_0156 Pmen_0156 Pmen_0157 Pmen_0157 Pmen_0178 Pmen_0178 Pmen_0197 Pmen_0197 Pmen_0249 Pmen_0249 dsbB dsbB Pmen_0292 Pmen_0292 Pmen_0385 Pmen_0385 Pmen_0388 Pmen_0388 Pmen_0418 Pmen_0418 Pmen_0451 Pmen_0451 Pmen_0492 Pmen_0492 Pmen_0493 Pmen_0493 Pmen_0654 Pmen_0654 Pmen_0658 Pmen_0658 dsbD dsbD Pmen_0746 Pmen_0746 Pmen_0747 Pmen_0747 Pmen_0903 Pmen_0903 Pmen_0904 Pmen_0904 Pmen_0905 Pmen_0905 msrQ msrQ Pmen_1128 Pmen_1128 Pmen_1226 Pmen_1226 azoR azoR rnfG rnfG rnfC rnfC Pmen_1431 Pmen_1431 Pmen_1443 Pmen_1443 nqrF nqrF Pmen_1714 Pmen_1714 Pmen_1741 Pmen_1741 Pmen_1809 Pmen_1809 Pmen_1949 Pmen_1949 Pmen_1958 Pmen_1958 azoR-2 azoR-2 Pmen_2019 Pmen_2019 Pmen_2160 Pmen_2160 Pmen_2167 Pmen_2167 Pmen_2197 Pmen_2197 Pmen_2199 Pmen_2199 Pmen_2216 Pmen_2216 Pmen_2231 Pmen_2231 Pmen_2232 Pmen_2232 Pmen_2262 Pmen_2262 Pmen_2266 Pmen_2266 Pmen_2267 Pmen_2267 nuoA nuoA nuoB nuoB nuoC nuoC Pmen_2416 Pmen_2416 Pmen_2417 Pmen_2417 Pmen_2420 Pmen_2420 Pmen_2422 Pmen_2422 Pmen_2423 Pmen_2423 nuoN nuoN Pmen_2504 Pmen_2504 Pmen_2505 Pmen_2505 Pmen_2506 Pmen_2506 Pmen_2507 Pmen_2507 Pmen_2542 Pmen_2542 Pmen_2593 Pmen_2593 Pmen_2599 Pmen_2599 Pmen_2600 Pmen_2600 Pmen_2602 Pmen_2602 Pmen_2604 Pmen_2604 Pmen_2605 Pmen_2605 Pmen_2607 Pmen_2607 Pmen_2655 Pmen_2655 Pmen_2706 Pmen_2706 Pmen_2707 Pmen_2707 Pmen_2708 Pmen_2708 Pmen_2761 Pmen_2761 napA napA Pmen_2983 Pmen_2983 Pmen_2990 Pmen_2990 Pmen_3019 Pmen_3019 azoR-3 azoR-3 Pmen_3234 Pmen_3234 Pmen_3296 Pmen_3296 Pmen_3506 Pmen_3506 Pmen_3551 Pmen_3551 Pmen_4403 Pmen_4403
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnfBElectron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (191 aa)
Pmen_0142Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (374 aa)
Pmen_0143Cytochrome-c oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (527 aa)
Pmen_0145PFAM: cytochrome c oxidase, subunit III. (298 aa)
Pmen_0156Cytochrome c5-like protein. (96 aa)
Pmen_0157PFAM: cytochrome c, class I. (201 aa)
Pmen_0178Hypothetical protein. (144 aa)
Pmen_0197PFAM: Rubredoxin-type Fe(Cys)4 protein. (55 aa)
Pmen_0249Cytochrome c5-like protein. (136 aa)
dsbBDisulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. (163 aa)
Pmen_0292Iron permease FTR1; PFAM: cytochrome c, class I; iron permease FTR1. (629 aa)
Pmen_0385PFAM: 17 kDa surface antigen. (150 aa)
Pmen_0388PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit. (523 aa)
Pmen_0418PFAM: cytochrome B561. (196 aa)
Pmen_0451Cytochrome c556-like protein. (148 aa)
Pmen_0492PFAM: electron transfer flavoprotein beta-subunit. (257 aa)
Pmen_0493PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit. (410 aa)
Pmen_0654Hypothetical protein. (368 aa)
Pmen_0658Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase. (149 aa)
dsbDProtein-disulfide reductase; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. (595 aa)
Pmen_0746PFAM: cytochrome bd ubiquinol oxidase, subunit I. (479 aa)
Pmen_0747TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II. (335 aa)
Pmen_0903Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (197 aa)
Pmen_0904Cytochrome b/b6, N-terminal domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (403 aa)
Pmen_0905Cytochrome c1-like protein. (259 aa)
msrQFerric reductase domain protein protein transmembrane component, N-terminal domain protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides elec [...] (208 aa)
Pmen_1128PFAM: beta-lactamase domain protein. (261 aa)
Pmen_1226Hypothetical protein. (246 aa)
azoRNAD(P)H dehydrogenase (quinone); Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (199 aa)
rnfGElectron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. (211 aa)
rnfCElectron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (944 aa)
Pmen_1431Multisubunit sodium/proton antiporter, MrpD subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I); TC 2.A.63.1. (498 aa)
Pmen_1443Multisubunit potassium/proton antiporter, PhaD subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I); TC 2.A.63.1.1. (501 aa)
nqrFNADH:ubiquinone oxidoreductase, subunit F; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (407 aa)
Pmen_1714PFAM: cytochrome B561. (182 aa)
Pmen_1741PFAM: glutaredoxin 2. (78 aa)
Pmen_1809Periplasmic protein-like protein. (226 aa)
Pmen_1949Hypothetical protein. (145 aa)
Pmen_1958Hypothetical protein. (139 aa)
azoR-2NAD(P)H dehydrogenase (quinone); Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (202 aa)
Pmen_2019NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I). (510 aa)
Pmen_2160PFAM: fatty acid cistrans isomerase. (758 aa)
Pmen_2167Hypothetical protein. (624 aa)
Pmen_2197PFAM: cytochrome c, class I. (106 aa)
Pmen_2199PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding. (730 aa)
Pmen_2216Hypothetical protein. (280 aa)
Pmen_2231PFAM: blue (type 1) copper domain protein. (177 aa)
Pmen_2232Uncharacterized copper-binding protein-like protein. (185 aa)
Pmen_2262Hypothetical protein. (154 aa)
Pmen_2266TIGRFAM: cytochrome c, monohaem; PFAM: cytochrome c oxidase, subunit II. (336 aa)
Pmen_2267PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (843 aa)
nuoANADH dehydrogenase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (137 aa)
nuoBNADH dehydrogenase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (225 aa)
nuoCNADH dehydrogenase subunit D / NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. (593 aa)
Pmen_2416NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (448 aa)
Pmen_2417NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (902 aa)
Pmen_2420NADH dehydrogenase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (169 aa)
Pmen_2422TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I). (616 aa)
Pmen_2423TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (509 aa)
nuoNNADH dehydrogenase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (494 aa)
Pmen_2504TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein. (235 aa)
Pmen_2505TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (590 aa)
Pmen_2506Succinate dehydrogenase subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH). (122 aa)
Pmen_2507PFAM: succinate dehydrogenase, cytochrome b subunit. (128 aa)
Pmen_2542Xylene monooxygenase electron transfer component; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein. (344 aa)
Pmen_2593Hypothetical protein. (269 aa)
Pmen_2599TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (479 aa)
Pmen_2600TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO. (202 aa)
Pmen_2602Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (308 aa)
Pmen_2604TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (480 aa)
Pmen_2605TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO. (202 aa)
Pmen_2607Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (332 aa)
Pmen_2655PFAM: blue (type 1) copper domain protein. (164 aa)
Pmen_2706PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit. (309 aa)
Pmen_2707PFAM: electron transfer flavoprotein beta-subunit. (249 aa)
Pmen_2708Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (554 aa)
Pmen_2761PFAM: protein of unknown function DUF989. (430 aa)
napAPeriplasmic nitrate reductase subunit NapA apoprotein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (834 aa)
Pmen_2983TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein. (198 aa)
Pmen_2990PFAM: flavodoxin/nitric oxide synthase; Belongs to the WrbA family. (198 aa)
Pmen_30194Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)
azoR-3NAD(P)H dehydrogenase (quinone); Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (233 aa)
Pmen_3234PFAM: cytochrome B561. (177 aa)
Pmen_3296PFAM: protein of unknown function DUF1111. (470 aa)
Pmen_3506TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin. (113 aa)
Pmen_3551PFAM: glutaredoxin. (106 aa)
Pmen_4403PFAM: Rubredoxin-type Fe(Cys)4 protein. (55 aa)
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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