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Pmen_4192 Pmen_4192 Pmen_0142 Pmen_0142 Pmen_0143 Pmen_0143 Pmen_0156 Pmen_0156 Pmen_0249 Pmen_0249 Pmen_0388 Pmen_0388 Pmen_0654 Pmen_0654 Pmen_0904 Pmen_0904 Pmen_0905 Pmen_0905 Pmen_1958 Pmen_1958 Pmen_2019 Pmen_2019 Pmen_2167 Pmen_2167 Pmen_2199 Pmen_2199 Pmen_2266 Pmen_2266 Pmen_2267 Pmen_2267 nuoA nuoA nuoB nuoB Pmen_2415 Pmen_2415 Pmen_2416 Pmen_2416 Pmen_2417 Pmen_2417 nuoH nuoH nuoI nuoI Pmen_2420 Pmen_2420 nuoK nuoK Pmen_2422 Pmen_2422 Pmen_2423 Pmen_2423 Pmen_2504 Pmen_2504 Pmen_2505 Pmen_2505 Pmen_2507 Pmen_2507 Pmen_2593 Pmen_2593 Pmen_2599 Pmen_2599 Pmen_2600 Pmen_2600 Pmen_2602 Pmen_2602 Pmen_2604 Pmen_2604 Pmen_2605 Pmen_2605 Pmen_2607 Pmen_2607 Pmen_3591 Pmen_3591 Pmen_4022 Pmen_4022
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pmen_4192PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (83 aa)
Pmen_0142Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (374 aa)
Pmen_0143Cytochrome-c oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (527 aa)
Pmen_0156Cytochrome c5-like protein. (96 aa)
Pmen_0249Cytochrome c5-like protein. (136 aa)
Pmen_0388PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit. (523 aa)
Pmen_0654Hypothetical protein. (368 aa)
Pmen_0904Cytochrome b/b6, N-terminal domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (403 aa)
Pmen_0905Cytochrome c1-like protein. (259 aa)
Pmen_1958Hypothetical protein. (139 aa)
Pmen_2019NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I). (510 aa)
Pmen_2167Hypothetical protein. (624 aa)
Pmen_2199PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding. (730 aa)
Pmen_2266TIGRFAM: cytochrome c, monohaem; PFAM: cytochrome c oxidase, subunit II. (336 aa)
Pmen_2267PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (843 aa)
nuoANADH dehydrogenase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (137 aa)
nuoBNADH dehydrogenase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (225 aa)
Pmen_2415TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit. (170 aa)
Pmen_2416NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (448 aa)
Pmen_2417NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (902 aa)
nuoHNADH dehydrogenase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (330 aa)
nuoINADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (182 aa)
Pmen_2420NADH dehydrogenase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (169 aa)
nuoKNADH dehydrogenase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
Pmen_2422TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I). (616 aa)
Pmen_2423TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (509 aa)
Pmen_2504TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein. (235 aa)
Pmen_2505TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (590 aa)
Pmen_2507PFAM: succinate dehydrogenase, cytochrome b subunit. (128 aa)
Pmen_2593Hypothetical protein. (269 aa)
Pmen_2599TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (479 aa)
Pmen_2600TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO. (202 aa)
Pmen_2602Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (308 aa)
Pmen_2604TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (480 aa)
Pmen_2605TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO. (202 aa)
Pmen_2607Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (332 aa)
Pmen_3591TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK. (162 aa)
Pmen_4022TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK. (177 aa)
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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