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Pmen_0120 Pmen_0120 Pmen_0231 Pmen_0231 hisC hisC Pmen_1340 Pmen_1340 Pmen_1696 Pmen_1696 Pmen_1697 Pmen_1697 Pmen_1698 Pmen_1698 Pmen_1699 Pmen_1699 hisC-2 hisC-2 Pmen_1971 Pmen_1971 Pmen_2738 Pmen_2738 Pmen_3028 Pmen_3028 Pmen_3114 Pmen_3114 Pmen_3441 Pmen_3441
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pmen_0120PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. (340 aa)
Pmen_0231TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (483 aa)
hisCTIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (350 aa)
Pmen_13405-carboxymethyl-2-hydroxymuconate isomerase-like protein. (117 aa)
Pmen_1696TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (360 aa)
Pmen_1697PFAM: homogentisate 1,2-dioxygenase. (379 aa)
Pmen_1698PFAM: fumarylacetoacetate (FAA) hydrolase. (326 aa)
Pmen_1699TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain. (216 aa)
hisC-2Aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class V; aminotransferase, class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (369 aa)
Pmen_1971PFAM: iron-containing alcohol dehydrogenase. (387 aa)
Pmen_2738PFAM: aminotransferase, class I and II. (398 aa)
Pmen_3028PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa)
Pmen_3114Aromatic amino acid aminotransferase apoenzyme; PFAM: aminotransferase, class I and II. (398 aa)
Pmen_3441TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (479 aa)
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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